Hb_015048_020

Information

Type -
Description -
Location Contig15048: 10248-13867
Sequence    

Annotation

kegg
ID rcu:RCOM_0127720
description ubiquitin-protein ligase, putative
nr
ID XP_012065962.1
description PREDICTED: myb-like protein D [Jatropha curcas]
swissprot
ID P29503
description Protein neuralized OS=Drosophila melanogaster GN=neur PE=1 SV=2
trembl
ID B9SVU9
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_0127720 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ubiquitin-protein ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015048_020 0.0 - - PREDICTED: myb-like protein D [Jatropha curcas]
2 Hb_001157_050 0.0700669577 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
3 Hb_000032_420 0.0779427312 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
4 Hb_010449_010 0.078468093 - - l-ascorbate oxidase, putative [Ricinus communis]
5 Hb_001117_050 0.0814179864 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
6 Hb_000112_080 0.0816625074 - - PREDICTED: glutamate receptor 2.1-like [Populus euphratica]
7 Hb_000003_750 0.0878934418 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
8 Hb_005542_120 0.090107924 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 [Jatropha curcas]
9 Hb_001366_290 0.0905289055 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
10 Hb_001794_040 0.0912930872 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
11 Hb_007218_040 0.094111364 - - Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]
12 Hb_000392_110 0.0945173572 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
13 Hb_001674_010 0.0956615304 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
14 Hb_000996_070 0.0963259995 - - unnamed protein product [Vitis vinifera]
15 Hb_098315_060 0.0970228263 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
16 Hb_000418_110 0.0977237158 - - PREDICTED: protein kinase PINOID [Jatropha curcas]
17 Hb_001396_030 0.0978948713 - - hypothetical protein POPTR_0001s13520g [Populus trichocarpa]
18 Hb_001544_090 0.0981682612 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
19 Hb_017383_010 0.0982409831 - - PREDICTED: uncharacterized protein LOC105628176 [Jatropha curcas]
20 Hb_070498_010 0.0993170096 - - receptor kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_015048_020 Hb_015048_020 Hb_001157_050 Hb_001157_050 Hb_015048_020--Hb_001157_050 Hb_000032_420 Hb_000032_420 Hb_015048_020--Hb_000032_420 Hb_010449_010 Hb_010449_010 Hb_015048_020--Hb_010449_010 Hb_001117_050 Hb_001117_050 Hb_015048_020--Hb_001117_050 Hb_000112_080 Hb_000112_080 Hb_015048_020--Hb_000112_080 Hb_000003_750 Hb_000003_750 Hb_015048_020--Hb_000003_750 Hb_007632_160 Hb_007632_160 Hb_001157_050--Hb_007632_160 Hb_001366_290 Hb_001366_290 Hb_001157_050--Hb_001366_290 Hb_001157_050--Hb_000003_750 Hb_000996_070 Hb_000996_070 Hb_001157_050--Hb_000996_070 Hb_128196_010 Hb_128196_010 Hb_001157_050--Hb_128196_010 Hb_000032_420--Hb_010449_010 Hb_017383_010 Hb_017383_010 Hb_000032_420--Hb_017383_010 Hb_001544_090 Hb_001544_090 Hb_000032_420--Hb_001544_090 Hb_000032_420--Hb_000996_070 Hb_000441_130 Hb_000441_130 Hb_000032_420--Hb_000441_130 Hb_010449_010--Hb_017383_010 Hb_017434_010 Hb_017434_010 Hb_010449_010--Hb_017434_010 Hb_000103_220 Hb_000103_220 Hb_010449_010--Hb_000103_220 Hb_010449_010--Hb_000996_070 Hb_098315_060 Hb_098315_060 Hb_010449_010--Hb_098315_060 Hb_005542_120 Hb_005542_120 Hb_001117_050--Hb_005542_120 Hb_001794_040 Hb_001794_040 Hb_001117_050--Hb_001794_040 Hb_008054_030 Hb_008054_030 Hb_001117_050--Hb_008054_030 Hb_000392_110 Hb_000392_110 Hb_001117_050--Hb_000392_110 Hb_008221_200 Hb_008221_200 Hb_001117_050--Hb_008221_200 Hb_010164_030 Hb_010164_030 Hb_001117_050--Hb_010164_030 Hb_001396_030 Hb_001396_030 Hb_000112_080--Hb_001396_030 Hb_005181_170 Hb_005181_170 Hb_000112_080--Hb_005181_170 Hb_007218_040 Hb_007218_040 Hb_000112_080--Hb_007218_040 Hb_001140_300 Hb_001140_300 Hb_000112_080--Hb_001140_300 Hb_000112_080--Hb_000003_750 Hb_011918_070 Hb_011918_070 Hb_000003_750--Hb_011918_070 Hb_003750_120 Hb_003750_120 Hb_000003_750--Hb_003750_120 Hb_005496_040 Hb_005496_040 Hb_000003_750--Hb_005496_040 Hb_070498_010 Hb_070498_010 Hb_000003_750--Hb_070498_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.246495 1.4945 1.72913 0 0.00697211
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.158229 0.848009

CAGE analysis