Hb_015057_010

Information

Type -
Description -
Location Contig15057: 3967-7682
Sequence    

Annotation

kegg
ID rcu:RCOM_0650270
description exonuclease, putative
nr
ID XP_012076260.1
description PREDICTED: uncharacterized exonuclease domain-containing protein At3g15140 [Jatropha curcas]
swissprot
ID Q8W566
description Uncharacterized exonuclease domain-containing protein At3g15140 OS=Arabidopsis thaliana GN=At3g15140 PE=2 SV=1
trembl
ID A0A067LBK2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15300 PE=4 SV=1
Gene Ontology
ID GO:0003824
description uncharacterized exonuclease domain-containing protein at3g15140

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12676: 4115-6820
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015057_010 0.0 - - PREDICTED: uncharacterized exonuclease domain-containing protein At3g15140 [Jatropha curcas]
2 Hb_004453_150 0.0646068273 - - BnaC02g13240D [Brassica napus]
3 Hb_000963_190 0.0936765748 - - Glutamine amidotransferase subunit pdxT, putative [Ricinus communis]
4 Hb_001454_140 0.0942245378 - - protein arginine n-methyltransferase, putative [Ricinus communis]
5 Hb_001235_070 0.0952835854 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000380_010 0.0974726023 - - PREDICTED: uncharacterized protein LOC105640155 isoform X3 [Jatropha curcas]
7 Hb_009558_020 0.0989478867 - - PREDICTED: E3 ubiquitin-protein ligase PRT6 isoform X1 [Jatropha curcas]
8 Hb_008173_120 0.0995775423 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006788_070 0.1008038282 - - 2-methyl-6-geranylgeranylbenzoquinone methyltranferase [Hevea brasiliensis]
10 Hb_004143_110 0.1021860128 - - PREDICTED: uncharacterized protein LOC105630719 isoform X2 [Jatropha curcas]
11 Hb_000175_070 0.1039043818 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
12 Hb_007193_100 0.1043910747 - - syntaxin family protein [Populus trichocarpa]
13 Hb_002259_150 0.1046197222 - - BnaC04g40780D [Brassica napus]
14 Hb_000442_160 0.1048574584 - - alpha-soluble nsf attachment protein, putative [Ricinus communis]
15 Hb_004055_140 0.1057505084 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
16 Hb_000491_090 0.1068006272 - - hypothetical protein B456_008G219400 [Gossypium raimondii]
17 Hb_002259_030 0.1090881032 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001246_100 0.1093715524 - - Ras-related small GTP-binding family protein [Theobroma cacao]
19 Hb_000676_290 0.1116052855 - - PREDICTED: glutaredoxin-C3 [Jatropha curcas]
20 Hb_001369_050 0.1116281215 - - hypothetical protein MIMGU_mgv1a0083172mg, partial [Erythranthe guttata]

Gene co-expression network

sample Hb_015057_010 Hb_015057_010 Hb_004453_150 Hb_004453_150 Hb_015057_010--Hb_004453_150 Hb_000963_190 Hb_000963_190 Hb_015057_010--Hb_000963_190 Hb_001454_140 Hb_001454_140 Hb_015057_010--Hb_001454_140 Hb_001235_070 Hb_001235_070 Hb_015057_010--Hb_001235_070 Hb_000380_010 Hb_000380_010 Hb_015057_010--Hb_000380_010 Hb_009558_020 Hb_009558_020 Hb_015057_010--Hb_009558_020 Hb_011161_040 Hb_011161_040 Hb_004453_150--Hb_011161_040 Hb_025193_050 Hb_025193_050 Hb_004453_150--Hb_025193_050 Hb_007193_100 Hb_007193_100 Hb_004453_150--Hb_007193_100 Hb_002272_260 Hb_002272_260 Hb_004453_150--Hb_002272_260 Hb_000175_070 Hb_000175_070 Hb_004453_150--Hb_000175_070 Hb_007101_100 Hb_007101_100 Hb_000963_190--Hb_007101_100 Hb_000676_290 Hb_000676_290 Hb_000963_190--Hb_000676_290 Hb_000963_190--Hb_001235_070 Hb_000963_190--Hb_007193_100 Hb_000963_190--Hb_001454_140 Hb_071130_030 Hb_071130_030 Hb_000963_190--Hb_071130_030 Hb_001246_100 Hb_001246_100 Hb_001454_140--Hb_001246_100 Hb_001454_140--Hb_007101_100 Hb_004374_200 Hb_004374_200 Hb_001454_140--Hb_004374_200 Hb_002686_270 Hb_002686_270 Hb_001454_140--Hb_002686_270 Hb_033642_010 Hb_033642_010 Hb_001454_140--Hb_033642_010 Hb_002374_160 Hb_002374_160 Hb_001454_140--Hb_002374_160 Hb_005686_110 Hb_005686_110 Hb_001235_070--Hb_005686_110 Hb_001369_050 Hb_001369_050 Hb_001235_070--Hb_001369_050 Hb_000371_080 Hb_000371_080 Hb_001235_070--Hb_000371_080 Hb_148209_120 Hb_148209_120 Hb_001235_070--Hb_148209_120 Hb_005398_030 Hb_005398_030 Hb_001235_070--Hb_005398_030 Hb_004595_020 Hb_004595_020 Hb_001235_070--Hb_004595_020 Hb_007317_060 Hb_007317_060 Hb_000380_010--Hb_007317_060 Hb_008173_120 Hb_008173_120 Hb_000380_010--Hb_008173_120 Hb_005117_010 Hb_005117_010 Hb_000380_010--Hb_005117_010 Hb_009543_030 Hb_009543_030 Hb_000380_010--Hb_009543_030 Hb_007012_020 Hb_007012_020 Hb_000380_010--Hb_007012_020 Hb_009558_020--Hb_000175_070 Hb_006788_070 Hb_006788_070 Hb_009558_020--Hb_006788_070 Hb_000671_100 Hb_000671_100 Hb_009558_020--Hb_000671_100 Hb_010261_020 Hb_010261_020 Hb_009558_020--Hb_010261_020 Hb_000365_360 Hb_000365_360 Hb_009558_020--Hb_000365_360 Hb_009558_020--Hb_007193_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.06822 1.05607 0.905673 1.48675 3.29579 11.4252
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.94767 5.56414 5.41276 2.40348 0.97132

CAGE analysis