Hb_015057_020

Information

Type -
Description -
Location Contig15057: 15690-25110
Sequence    

Annotation

kegg
ID rcu:RCOM_0650300
description hypothetical protein
nr
ID XP_012076268.1
description PREDICTED: E3 SUMO-protein ligase MMS21 [Jatropha curcas]
swissprot
ID Q8GYH7
description E3 SUMO-protein ligase MMS21 OS=Arabidopsis thaliana GN=MMS21 PE=1 SV=1
trembl
ID A0A067LBT9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15301 PE=4 SV=1
Gene Ontology
ID GO:0030915
description e3 sumo-protein ligase mms21

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12677: 15687-25078
cDNA
(Sanger)
(ID:Location)		 013_C15.ab1: 16130-25078 , 042_C15.ab1: 16038-25078

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015057_020 0.0 - - PREDICTED: E3 SUMO-protein ligase MMS21 [Jatropha curcas]
2 Hb_032920_070 0.0760402694 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
3 Hb_000210_060 0.082293825 transcription factor TF Family: E2F-DP hypothetical protein JCGZ_08780 [Jatropha curcas]
4 Hb_001728_040 0.0845783015 - - Aconitase/3-isopropylmalate dehydratase protein [Theobroma cacao]
5 Hb_002477_290 0.0856905459 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
6 Hb_005276_040 0.0872707652 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Jatropha curcas]
7 Hb_006538_090 0.0921530969 - - PREDICTED: IST1 homolog [Jatropha curcas]
8 Hb_003376_180 0.0926159134 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
9 Hb_005653_070 0.0928878084 - - K+ transport growth defect-like protein [Hevea brasiliensis]
10 Hb_006637_030 0.0969214344 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
11 Hb_001016_100 0.0977373648 - - PREDICTED: V-type proton ATPase subunit E-like [Pyrus x bretschneideri]
12 Hb_002110_100 0.0978089729 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
13 Hb_000174_260 0.1023987958 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent) [Jatropha curcas]
14 Hb_168893_020 0.1037522121 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
15 Hb_040819_010 0.1046875521 - - protein phosphatase 2c, putative [Ricinus communis]
16 Hb_020390_010 0.1054795067 - - PREDICTED: expansin-A13 [Jatropha curcas]
17 Hb_002272_270 0.1073186569 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
18 Hb_000428_060 0.1075229251 - - malate dehydrogenase, putative [Ricinus communis]
19 Hb_004007_110 0.1097450288 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
20 Hb_007904_230 0.1118327047 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_015057_020 Hb_015057_020 Hb_032920_070 Hb_032920_070 Hb_015057_020--Hb_032920_070 Hb_000210_060 Hb_000210_060 Hb_015057_020--Hb_000210_060 Hb_001728_040 Hb_001728_040 Hb_015057_020--Hb_001728_040 Hb_002477_290 Hb_002477_290 Hb_015057_020--Hb_002477_290 Hb_005276_040 Hb_005276_040 Hb_015057_020--Hb_005276_040 Hb_006538_090 Hb_006538_090 Hb_015057_020--Hb_006538_090 Hb_020390_010 Hb_020390_010 Hb_032920_070--Hb_020390_010 Hb_002110_100 Hb_002110_100 Hb_032920_070--Hb_002110_100 Hb_000297_120 Hb_000297_120 Hb_032920_070--Hb_000297_120 Hb_002392_010 Hb_002392_010 Hb_032920_070--Hb_002392_010 Hb_000185_220 Hb_000185_220 Hb_032920_070--Hb_000185_220 Hb_168893_020 Hb_168893_020 Hb_000210_060--Hb_168893_020 Hb_000210_060--Hb_002477_290 Hb_001898_050 Hb_001898_050 Hb_000210_060--Hb_001898_050 Hb_001510_020 Hb_001510_020 Hb_000210_060--Hb_001510_020 Hb_000210_060--Hb_005276_040 Hb_002303_020 Hb_002303_020 Hb_001728_040--Hb_002303_020 Hb_000847_060 Hb_000847_060 Hb_001728_040--Hb_000847_060 Hb_005653_070 Hb_005653_070 Hb_001728_040--Hb_005653_070 Hb_000723_230 Hb_000723_230 Hb_001728_040--Hb_000723_230 Hb_003376_180 Hb_003376_180 Hb_001728_040--Hb_003376_180 Hb_004880_150 Hb_004880_150 Hb_002477_290--Hb_004880_150 Hb_000841_050 Hb_000841_050 Hb_002477_290--Hb_000841_050 Hb_002660_170 Hb_002660_170 Hb_002477_290--Hb_002660_170 Hb_007218_120 Hb_007218_120 Hb_002477_290--Hb_007218_120 Hb_000251_030 Hb_000251_030 Hb_002477_290--Hb_000251_030 Hb_006059_010 Hb_006059_010 Hb_002477_290--Hb_006059_010 Hb_000174_260 Hb_000174_260 Hb_005276_040--Hb_000174_260 Hb_002045_060 Hb_002045_060 Hb_005276_040--Hb_002045_060 Hb_005276_040--Hb_002392_010 Hb_000428_060 Hb_000428_060 Hb_005276_040--Hb_000428_060 Hb_001221_030 Hb_001221_030 Hb_005276_040--Hb_001221_030 Hb_006538_090--Hb_168893_020 Hb_004005_020 Hb_004005_020 Hb_006538_090--Hb_004005_020 Hb_000538_120 Hb_000538_120 Hb_006538_090--Hb_000538_120 Hb_001301_110 Hb_001301_110 Hb_006538_090--Hb_001301_110 Hb_003058_120 Hb_003058_120 Hb_006538_090--Hb_003058_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.35719 5.16106 10.2689 13.9799 2.75424 2.56349
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.42658 12.4782 6.08694 10.3429 10.1187

CAGE analysis