Hb_015057_030

Information

Type transcription factor
Description TF Family: HB
Location Contig15057: 30851-31411
Sequence    

Annotation

kegg
ID pop:POPTR_0011s11510g
description POPTRDRAFT_235760; hypothetical protein
nr
ID XP_012076694.1
description PREDICTED: homeobox-leucine zipper protein ATHB-52, partial [Jatropha curcas]
swissprot
ID Q9FN29
description Homeobox-leucine zipper protein ATHB-52 OS=Arabidopsis thaliana GN=ATHB-52 PE=2 SV=1
trembl
ID A0A067LF56
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15302 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox-leucine zipper protein athb-52-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12679: 31236-31394
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015057_030 0.0 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-52, partial [Jatropha curcas]
2 Hb_001892_090 0.1634079181 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006277_070 0.1926863604 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000622_070 0.1950213607 - - conserved hypothetical protein [Ricinus communis]
5 Hb_051067_010 0.2040193766 - - -
6 Hb_002890_080 0.2091292638 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000016_070 0.2186860816 transcription factor TF Family: M-type PREDICTED: MADS-box protein SOC1-like, partial [Nicotiana sylvestris]
8 Hb_000019_020 0.2186860816 - - hypothetical protein POPTR_0017s08820g, partial [Populus trichocarpa]
9 Hb_000019_160 0.2186860816 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
10 Hb_000029_230 0.2186860816 - - hypothetical protein ARALYDRAFT_496947 [Arabidopsis lyrata subsp. lyrata]
11 Hb_000032_170 0.2186860816 - - -
12 Hb_000042_170 0.2186860816 transcription factor TF Family: ULT Protein ULTRAPETALA2, putative [Ricinus communis]
13 Hb_000050_210 0.2186860816 - - PREDICTED: uncharacterized protein LOC105797515 [Gossypium raimondii]
14 Hb_000083_100 0.2186860816 - - -
15 Hb_000094_270 0.2186860816 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
16 Hb_000099_100 0.2186860816 - - -
17 Hb_000107_600 0.2186860816 - - -
18 Hb_000141_100 0.2186860816 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Jatropha curcas]
19 Hb_000155_220 0.2186860816 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 9-like [Jatropha curcas]
20 Hb_000161_110 0.2186860816 - - hypothetical protein POPTR_0012s02100g [Populus trichocarpa]

Gene co-expression network

sample Hb_015057_030 Hb_015057_030 Hb_001892_090 Hb_001892_090 Hb_015057_030--Hb_001892_090 Hb_006277_070 Hb_006277_070 Hb_015057_030--Hb_006277_070 Hb_000622_070 Hb_000622_070 Hb_015057_030--Hb_000622_070 Hb_051067_010 Hb_051067_010 Hb_015057_030--Hb_051067_010 Hb_002890_080 Hb_002890_080 Hb_015057_030--Hb_002890_080 Hb_000016_070 Hb_000016_070 Hb_015057_030--Hb_000016_070 Hb_001892_090--Hb_006277_070 Hb_001892_090--Hb_000016_070 Hb_000019_020 Hb_000019_020 Hb_001892_090--Hb_000019_020 Hb_000019_160 Hb_000019_160 Hb_001892_090--Hb_000019_160 Hb_000029_230 Hb_000029_230 Hb_001892_090--Hb_000029_230 Hb_000002_170 Hb_000002_170 Hb_006277_070--Hb_000002_170 Hb_012573_010 Hb_012573_010 Hb_006277_070--Hb_012573_010 Hb_003732_040 Hb_003732_040 Hb_006277_070--Hb_003732_040 Hb_006277_070--Hb_051067_010 Hb_002391_330 Hb_002391_330 Hb_006277_070--Hb_002391_330 Hb_002805_010 Hb_002805_010 Hb_000622_070--Hb_002805_010 Hb_000622_070--Hb_000016_070 Hb_000622_070--Hb_000019_020 Hb_000622_070--Hb_000019_160 Hb_000622_070--Hb_000029_230 Hb_000032_170 Hb_000032_170 Hb_000622_070--Hb_000032_170 Hb_147793_010 Hb_147793_010 Hb_051067_010--Hb_147793_010 Hb_023661_060 Hb_023661_060 Hb_051067_010--Hb_023661_060 Hb_051067_010--Hb_000002_170 Hb_034661_020 Hb_034661_020 Hb_051067_010--Hb_034661_020 Hb_001439_090 Hb_001439_090 Hb_002890_080--Hb_001439_090 Hb_024650_040 Hb_024650_040 Hb_002890_080--Hb_024650_040 Hb_006469_120 Hb_006469_120 Hb_002890_080--Hb_006469_120 Hb_002890_070 Hb_002890_070 Hb_002890_080--Hb_002890_070 Hb_002890_080--Hb_051067_010 Hb_000016_070--Hb_000019_020 Hb_000016_070--Hb_000019_160 Hb_000016_070--Hb_000029_230 Hb_000016_070--Hb_000032_170 Hb_000042_170 Hb_000042_170 Hb_000016_070--Hb_000042_170 Hb_000050_210 Hb_000050_210 Hb_000016_070--Hb_000050_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0493376 0.456854 4.09166 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.111782 49.8044 0 0.361785 0

CAGE analysis