Hb_015091_010

Information

Type -
Description -
Location Contig15091: 4615-6122
Sequence    

Annotation

kegg
ID pda:103696510
description uncharacterized LOC103696510
nr
ID XP_009764284.1
description PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID A0A0B0NGV1
description ATP-dependent zinc metalloprotease FtsH OS=Gossypium arboreum GN=F383_19049 PE=4 SV=1
Gene Ontology
ID GO:0003676
description PREDICTED: uncharacterized protein LOC104216022, partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015091_010 0.0 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
2 Hb_063511_010 0.0537887722 - - DNA-directed RNA polymerase II subunit RPB4 [Gossypium arboreum]
3 Hb_001951_280 0.1268898807 - - -
4 Hb_004297_030 0.1548137142 - - PREDICTED: uncharacterized protein LOC105633198 [Jatropha curcas]
5 Hb_000348_040 0.1717564153 - - -
6 Hb_088496_010 0.1843360402 - - PREDICTED: uncharacterized protein LOC104889111 [Beta vulgaris subsp. vulgaris]
7 Hb_006501_030 0.1905697813 - - hypothetical protein POPTR_0006s17720g [Populus trichocarpa]
8 Hb_169488_010 0.2084734406 - - PREDICTED: choline monooxygenase, chloroplastic-like [Populus euphratica]
9 Hb_003702_050 0.2093194985 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
10 Hb_003116_020 0.2237047439 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
11 Hb_000563_270 0.2382249391 - - -
12 Hb_005063_070 0.2446605883 - - PREDICTED: PRA1 family protein E [Jatropha curcas]
13 Hb_000048_100 0.2476882288 - - conserved hypothetical protein [Ricinus communis]
14 Hb_030765_010 0.258558076 desease resistance Gene Name: ABC_tran PREDICTED: ABC transporter G family member 11-like isoform X1 [Solanum lycopersicum]
15 Hb_094721_010 0.2721616263 - - PREDICTED: uncharacterized protein LOC104809818, partial [Tarenaya hassleriana]
16 Hb_012324_020 0.2748585419 - - -
17 Hb_000107_640 0.2830697153 - - conserved hypothetical protein [Ricinus communis]
18 Hb_126398_010 0.2896735231 - - -
19 Hb_000003_770 0.2924437555 - - -
20 Hb_175572_010 0.2949852909 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]

Gene co-expression network

sample Hb_015091_010 Hb_015091_010 Hb_063511_010 Hb_063511_010 Hb_015091_010--Hb_063511_010 Hb_001951_280 Hb_001951_280 Hb_015091_010--Hb_001951_280 Hb_004297_030 Hb_004297_030 Hb_015091_010--Hb_004297_030 Hb_000348_040 Hb_000348_040 Hb_015091_010--Hb_000348_040 Hb_088496_010 Hb_088496_010 Hb_015091_010--Hb_088496_010 Hb_006501_030 Hb_006501_030 Hb_015091_010--Hb_006501_030 Hb_063511_010--Hb_001951_280 Hb_169488_010 Hb_169488_010 Hb_063511_010--Hb_169488_010 Hb_003702_050 Hb_003702_050 Hb_063511_010--Hb_003702_050 Hb_063511_010--Hb_000348_040 Hb_063511_010--Hb_006501_030 Hb_001951_280--Hb_169488_010 Hb_001951_280--Hb_003702_050 Hb_001951_280--Hb_000348_040 Hb_005063_070 Hb_005063_070 Hb_001951_280--Hb_005063_070 Hb_004297_030--Hb_088496_010 Hb_000003_770 Hb_000003_770 Hb_004297_030--Hb_000003_770 Hb_094721_010 Hb_094721_010 Hb_004297_030--Hb_094721_010 Hb_012324_020 Hb_012324_020 Hb_004297_030--Hb_012324_020 Hb_004297_030--Hb_000348_040 Hb_000348_040--Hb_006501_030 Hb_000348_040--Hb_088496_010 Hb_000048_100 Hb_000048_100 Hb_000348_040--Hb_000048_100 Hb_088496_010--Hb_000003_770 Hb_088496_010--Hb_094721_010 Hb_001379_130 Hb_001379_130 Hb_088496_010--Hb_001379_130 Hb_088496_010--Hb_012324_020 Hb_001257_020 Hb_001257_020 Hb_088496_010--Hb_001257_020 Hb_005946_030 Hb_005946_030 Hb_006501_030--Hb_005946_030 Hb_006501_030--Hb_000048_100 Hb_006501_030--Hb_001951_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.046595
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0347495 0.0273369 0 0 0

CAGE analysis