Hb_015141_010

Information

Type -
Description -
Location Contig15141: 4710-9147
Sequence    

Annotation

kegg
ID dosa:Os02t0701600-01
description Os02g0701600; Similar to Tocopherol O-methyltransferase, chloroplast precursor (EC 2.1.1.95) (Gamma-tocopherol methyltransferase).
nr
ID BAH10645.1
description gamma-tocopherol methyltransferase [Hevea brasiliensis]
swissprot
ID Q6ZIK0
description Probable tocopherol O-methyltransferase, chloroplastic OS=Oryza sativa subsp. japonica GN=VTE4 PE=2 SV=1
trembl
ID B7X942
description Gamma-tocopherol methyltransferase OS=Hevea brasiliensis GN=gamma-tmt PE=2 SV=1
Gene Ontology
ID GO:0009536
description gamma-tocopherol methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12852: 4790-9022 , PASA_asmbl_12853: 4790-9022 , PASA_asmbl_12854: 5188-5562 , PASA_asmbl_12855: 5591-5724
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015141_010 0.0 - - gamma-tocopherol methyltransferase [Hevea brasiliensis]
2 Hb_022137_050 0.0982493856 - - PREDICTED: BAG family molecular chaperone regulator 1-like [Jatropha curcas]
3 Hb_000352_280 0.0994785618 - - PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X2 [Jatropha curcas]
4 Hb_074197_030 0.10109606 - - unnamed protein product [Vitis vinifera]
5 Hb_172426_060 0.1051637416 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
6 Hb_000805_010 0.1138339356 - - PREDICTED: uncharacterized protein LOC105629931 [Jatropha curcas]
7 Hb_003935_070 0.1144312189 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
8 Hb_000684_200 0.115879236 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
9 Hb_002235_110 0.1218444816 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
10 Hb_008725_090 0.1218924019 - - PREDICTED: uncharacterized protein LOC105642581 [Jatropha curcas]
11 Hb_000019_080 0.1230203797 transcription factor TF Family: bHLH PREDICTED: transcription factor ICE1 [Jatropha curcas]
12 Hb_000395_010 0.1233275673 - - alpha/beta hydrolase domain containing protein 1,3, putative [Ricinus communis]
13 Hb_004096_210 0.1245351717 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
14 Hb_000612_090 0.1260058353 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
15 Hb_032631_030 0.1275879818 - - phosphatidic acid phosphatase, putative [Ricinus communis]
16 Hb_169383_010 0.1324884611 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]
17 Hb_022693_010 0.1401613714 - - pectin acetylesterase, putative [Ricinus communis]
18 Hb_009393_130 0.1410830253 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
19 Hb_006472_040 0.1425698806 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
20 Hb_002272_220 0.143977639 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_015141_010 Hb_015141_010 Hb_022137_050 Hb_022137_050 Hb_015141_010--Hb_022137_050 Hb_000352_280 Hb_000352_280 Hb_015141_010--Hb_000352_280 Hb_074197_030 Hb_074197_030 Hb_015141_010--Hb_074197_030 Hb_172426_060 Hb_172426_060 Hb_015141_010--Hb_172426_060 Hb_000805_010 Hb_000805_010 Hb_015141_010--Hb_000805_010 Hb_003935_070 Hb_003935_070 Hb_015141_010--Hb_003935_070 Hb_009296_030 Hb_009296_030 Hb_022137_050--Hb_009296_030 Hb_002477_020 Hb_002477_020 Hb_022137_050--Hb_002477_020 Hb_002170_080 Hb_002170_080 Hb_022137_050--Hb_002170_080 Hb_022137_050--Hb_000352_280 Hb_006472_040 Hb_006472_040 Hb_022137_050--Hb_006472_040 Hb_000352_280--Hb_172426_060 Hb_000019_080 Hb_000019_080 Hb_000352_280--Hb_000019_080 Hb_000352_280--Hb_074197_030 Hb_009393_130 Hb_009393_130 Hb_000352_280--Hb_009393_130 Hb_010557_010 Hb_010557_010 Hb_000352_280--Hb_010557_010 Hb_000612_090 Hb_000612_090 Hb_074197_030--Hb_000612_090 Hb_002235_110 Hb_002235_110 Hb_074197_030--Hb_002235_110 Hb_074197_030--Hb_172426_060 Hb_008725_090 Hb_008725_090 Hb_074197_030--Hb_008725_090 Hb_002811_250 Hb_002811_250 Hb_172426_060--Hb_002811_250 Hb_172426_060--Hb_000019_080 Hb_032631_030 Hb_032631_030 Hb_172426_060--Hb_032631_030 Hb_000679_080 Hb_000679_080 Hb_172426_060--Hb_000679_080 Hb_000805_010--Hb_003935_070 Hb_002759_220 Hb_002759_220 Hb_000805_010--Hb_002759_220 Hb_002817_040 Hb_002817_040 Hb_000805_010--Hb_002817_040 Hb_000805_010--Hb_002235_110 Hb_000395_010 Hb_000395_010 Hb_000805_010--Hb_000395_010 Hb_000649_040 Hb_000649_040 Hb_003935_070--Hb_000649_040 Hb_000108_150 Hb_000108_150 Hb_003935_070--Hb_000108_150 Hb_000749_020 Hb_000749_020 Hb_003935_070--Hb_000749_020 Hb_003935_070--Hb_002759_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.944835 1.17926 16.8217 14.3405 0.233756 0.476447
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.49583 1.36701 0.980257 4.01857 28.8463

CAGE analysis