Hb_015175_030

Information

Type -
Description -
Location Contig15175: 41855-46943
Sequence    

Annotation

kegg
ID pop:POPTR_0002s00610g
description POPTRDRAFT_550726; RNA recognition motif-containing family protein
nr
ID XP_012073568.1
description PREDICTED: RNA-binding protein 24-A [Jatropha curcas]
swissprot
ID Q9M1S3
description Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1
trembl
ID A0A067KKX2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08033 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna recognition motif-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12892: 42263-46891 , PASA_asmbl_12893: 43591-44077
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015175_030 0.0 - - PREDICTED: RNA-binding protein 24-A [Jatropha curcas]
2 Hb_004032_100 0.0731154128 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]
3 Hb_000283_110 0.0744618962 - - PREDICTED: probable prefoldin subunit 4 isoform X2 [Jatropha curcas]
4 Hb_001505_020 0.0780337705 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Jatropha curcas]
5 Hb_001998_050 0.0796618311 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
6 Hb_000227_230 0.0801521508 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
7 Hb_000274_020 0.0828293263 - - PREDICTED: uncharacterized protein LOC105630805 isoform X1 [Jatropha curcas]
8 Hb_000340_140 0.0829150068 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Vitis vinifera]
9 Hb_000751_130 0.0829960377 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
10 Hb_001242_110 0.0831272667 - - 40S ribosomal protein S18, putative [Ricinus communis]
11 Hb_148209_080 0.0832006609 - - MED32, putative [Theobroma cacao]
12 Hb_002701_050 0.0847196303 - - PREDICTED: 60S ribosomal protein L7a-like [Jatropha curcas]
13 Hb_001143_080 0.0877692904 - - PREDICTED: F-box protein 7 [Jatropha curcas]
14 Hb_000136_170 0.0886295548 - - PREDICTED: uncharacterized protein LOC105645501 [Jatropha curcas]
15 Hb_000574_480 0.0888796133 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
16 Hb_003226_210 0.089457211 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
17 Hb_000380_190 0.0901139467 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
18 Hb_006816_530 0.0901572915 - - 60S ribosomal protein L18, putative [Ricinus communis]
19 Hb_000975_110 0.0904936006 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 [Jatropha curcas]
20 Hb_000364_020 0.0910093233 - - PREDICTED: SUMO-conjugating enzyme SCE1 isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_015175_030 Hb_015175_030 Hb_004032_100 Hb_004032_100 Hb_015175_030--Hb_004032_100 Hb_000283_110 Hb_000283_110 Hb_015175_030--Hb_000283_110 Hb_001505_020 Hb_001505_020 Hb_015175_030--Hb_001505_020 Hb_001998_050 Hb_001998_050 Hb_015175_030--Hb_001998_050 Hb_000227_230 Hb_000227_230 Hb_015175_030--Hb_000227_230 Hb_000274_020 Hb_000274_020 Hb_015175_030--Hb_000274_020 Hb_000024_080 Hb_000024_080 Hb_004032_100--Hb_000024_080 Hb_000087_020 Hb_000087_020 Hb_004032_100--Hb_000087_020 Hb_000751_130 Hb_000751_130 Hb_004032_100--Hb_000751_130 Hb_180301_010 Hb_180301_010 Hb_004032_100--Hb_180301_010 Hb_000787_140 Hb_000787_140 Hb_004032_100--Hb_000787_140 Hb_000085_320 Hb_000085_320 Hb_004032_100--Hb_000085_320 Hb_003226_210 Hb_003226_210 Hb_000283_110--Hb_003226_210 Hb_003893_050 Hb_003893_050 Hb_000283_110--Hb_003893_050 Hb_002431_050 Hb_002431_050 Hb_000283_110--Hb_002431_050 Hb_001638_260 Hb_001638_260 Hb_000283_110--Hb_001638_260 Hb_000029_200 Hb_000029_200 Hb_000283_110--Hb_000029_200 Hb_000441_190 Hb_000441_190 Hb_000283_110--Hb_000441_190 Hb_006816_530 Hb_006816_530 Hb_001505_020--Hb_006816_530 Hb_002713_070 Hb_002713_070 Hb_001505_020--Hb_002713_070 Hb_000136_170 Hb_000136_170 Hb_001505_020--Hb_000136_170 Hb_001433_050 Hb_001433_050 Hb_001505_020--Hb_001433_050 Hb_001505_020--Hb_000227_230 Hb_001814_050 Hb_001814_050 Hb_001505_020--Hb_001814_050 Hb_001998_050--Hb_000227_230 Hb_000574_480 Hb_000574_480 Hb_001998_050--Hb_000574_480 Hb_002925_030 Hb_002925_030 Hb_001998_050--Hb_002925_030 Hb_012753_160 Hb_012753_160 Hb_001998_050--Hb_012753_160 Hb_004586_320 Hb_004586_320 Hb_001998_050--Hb_004586_320 Hb_012675_060 Hb_012675_060 Hb_001998_050--Hb_012675_060 Hb_000227_230--Hb_002925_030 Hb_089839_020 Hb_089839_020 Hb_000227_230--Hb_089839_020 Hb_003398_120 Hb_003398_120 Hb_000227_230--Hb_003398_120 Hb_000380_190 Hb_000380_190 Hb_000227_230--Hb_000380_190 Hb_000274_020--Hb_000751_130 Hb_001109_020 Hb_001109_020 Hb_000274_020--Hb_001109_020 Hb_000274_020--Hb_000087_020 Hb_000046_110 Hb_000046_110 Hb_000274_020--Hb_000046_110 Hb_000444_050 Hb_000444_050 Hb_000274_020--Hb_000444_050 Hb_018133_060 Hb_018133_060 Hb_000274_020--Hb_018133_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.37546 6.45032 3.00576 10.4661 9.33029 18.548
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.7338 34.6936 18.8057 7.69951 4.65332

CAGE analysis