Hb_015198_020

Information

Type -
Description -
Location Contig15198: 20119-23319
Sequence    

Annotation

kegg
ID rcu:RCOM_1359400
description hypothetical protein
nr
ID XP_002521193.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q0WNN7
description Pentatricopeptide repeat-containing protein At2g30100, chloroplastic OS=Arabidopsis thaliana GN=At2g30100 PE=2 SV=2
trembl
ID B9S5C4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1359400 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12944: 20160-23174
cDNA
(Sanger)
(ID:Location)		 002_L17.ab1: 21238-22895 , 037_F09.ab1: 22163-22895 , 052_A06.ab1: 20942-22508

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015198_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000574_390 0.0654163584 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Jatropha curcas]
3 Hb_000047_030 0.0725152089 - - tfiif-alpha, putative [Ricinus communis]
4 Hb_011242_040 0.0830969844 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
5 Hb_013405_030 0.084978055 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003142_020 0.0920253222 - - PREDICTED: uncharacterized protein LOC105648334 [Jatropha curcas]
7 Hb_001898_160 0.0973312778 - - hypothetical protein POPTR_0004s23390g [Populus trichocarpa]
8 Hb_007632_220 0.0974248754 - - RNA-binding protein, putative [Ricinus communis]
9 Hb_001007_060 0.1001591999 - - Transcriptional corepressor SEUSS [Glycine soja]
10 Hb_008695_210 0.1005508674 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
11 Hb_006915_050 0.1006694386 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Jatropha curcas]
12 Hb_000631_080 0.101665107 transcription factor TF Family: C2H2 PREDICTED: dnaJ homolog subfamily C member 21 [Jatropha curcas]
13 Hb_000258_270 0.1026650654 - - PREDICTED: cullin-3A [Jatropha curcas]
14 Hb_000928_210 0.10356817 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
15 Hb_000236_070 0.1041982381 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000907_080 0.1087986478 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
17 Hb_004052_090 0.1101938578 transcription factor TF Family: C3H PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
18 Hb_011316_040 0.1102105066 - - peptidase, putative [Ricinus communis]
19 Hb_001140_220 0.111167152 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_002496_050 0.1116401046 - - PREDICTED: uncharacterized protein LOC105630509 [Jatropha curcas]

Gene co-expression network

sample Hb_015198_020 Hb_015198_020 Hb_000574_390 Hb_000574_390 Hb_015198_020--Hb_000574_390 Hb_000047_030 Hb_000047_030 Hb_015198_020--Hb_000047_030 Hb_011242_040 Hb_011242_040 Hb_015198_020--Hb_011242_040 Hb_013405_030 Hb_013405_030 Hb_015198_020--Hb_013405_030 Hb_003142_020 Hb_003142_020 Hb_015198_020--Hb_003142_020 Hb_001898_160 Hb_001898_160 Hb_015198_020--Hb_001898_160 Hb_000574_390--Hb_013405_030 Hb_000631_080 Hb_000631_080 Hb_000574_390--Hb_000631_080 Hb_086639_040 Hb_086639_040 Hb_000574_390--Hb_086639_040 Hb_000574_390--Hb_011242_040 Hb_000707_050 Hb_000707_050 Hb_000574_390--Hb_000707_050 Hb_000047_030--Hb_000574_390 Hb_000928_210 Hb_000928_210 Hb_000047_030--Hb_000928_210 Hb_000047_030--Hb_013405_030 Hb_004724_080 Hb_004724_080 Hb_000047_030--Hb_004724_080 Hb_001140_220 Hb_001140_220 Hb_000047_030--Hb_001140_220 Hb_011242_040--Hb_001140_220 Hb_011242_040--Hb_000047_030 Hb_001258_040 Hb_001258_040 Hb_011242_040--Hb_001258_040 Hb_000258_270 Hb_000258_270 Hb_011242_040--Hb_000258_270 Hb_001975_160 Hb_001975_160 Hb_013405_030--Hb_001975_160 Hb_002518_140 Hb_002518_140 Hb_013405_030--Hb_002518_140 Hb_001507_020 Hb_001507_020 Hb_013405_030--Hb_001507_020 Hb_000227_120 Hb_000227_120 Hb_003142_020--Hb_000227_120 Hb_001007_060 Hb_001007_060 Hb_003142_020--Hb_001007_060 Hb_002725_120 Hb_002725_120 Hb_003142_020--Hb_002725_120 Hb_003291_010 Hb_003291_010 Hb_003142_020--Hb_003291_010 Hb_003106_060 Hb_003106_060 Hb_003142_020--Hb_003106_060 Hb_009767_110 Hb_009767_110 Hb_003142_020--Hb_009767_110 Hb_001898_160--Hb_000047_030 Hb_082609_010 Hb_082609_010 Hb_001898_160--Hb_082609_010 Hb_000236_070 Hb_000236_070 Hb_001898_160--Hb_000236_070 Hb_000143_030 Hb_000143_030 Hb_001898_160--Hb_000143_030 Hb_011909_100 Hb_011909_100 Hb_001898_160--Hb_011909_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.0826 12.2509 7.96454 11.0495 19.9381 24.064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.746 20.9617 46.9126 10.2275 28.5483

CAGE analysis