Hb_015220_010

Information

Type -
Description -
Location Contig15220: 15790-18367
Sequence    

Annotation

kegg
ID pop:POPTR_0002s21490g
description POPTRDRAFT_755875; ribonuclease 3 family protein
nr
ID XP_012080705.1
description PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
swissprot
ID Q69KJ0
description Ribonuclease 3-like protein 3 OS=Oryza sativa subsp. japonica GN=Os06g0358800 PE=2 SV=1
trembl
ID A0A067K3V1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13725 PE=4 SV=1
Gene Ontology
ID GO:0003723
description ribonuclease 3-like protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015220_010 0.0 - - PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
2 Hb_003960_020 0.1005310315 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_000892_020 0.2047628501 - - unnamed protein product [Vitis vinifera]
4 Hb_001729_040 0.2289963933 - - hypothetical protein glysoja_049826, partial [Glycine soja]
5 Hb_000164_060 0.2322217096 - - -
6 Hb_000718_050 0.2465736051 - - PREDICTED: histone deacetylase 15 isoform X2 [Populus euphratica]
7 Hb_000318_090 0.2558768226 - - PREDICTED: uncharacterized protein LOC105179663 [Sesamum indicum]
8 Hb_185111_010 0.2639897213 - - -
9 Hb_007101_290 0.2873506918 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
10 Hb_026687_030 0.300606162 - - hypothetical protein AMTR_s00038p00220080 [Amborella trichopoda]
11 Hb_164646_010 0.3010498248 - - PREDICTED: acidic endochitinase-like [Pyrus x bretschneideri]
12 Hb_002227_010 0.3068217757 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Populus euphratica]
13 Hb_112440_010 0.3154114854 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
14 Hb_001703_110 0.3191673594 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
15 Hb_033834_050 0.3217972112 - - conserved hypothetical protein [Ricinus communis]
16 Hb_092891_010 0.3218362782 - - 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Theobroma cacao]
17 Hb_000622_320 0.3231113706 - - PREDICTED: chitinase 1-like [Vitis vinifera]
18 Hb_042871_010 0.3245003877 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
19 Hb_000152_310 0.3271953922 - - -
20 Hb_006469_120 0.3313755063 - - hypothetical protein POPTR_0005s16430g [Populus trichocarpa]

Gene co-expression network

sample Hb_015220_010 Hb_015220_010 Hb_003960_020 Hb_003960_020 Hb_015220_010--Hb_003960_020 Hb_000892_020 Hb_000892_020 Hb_015220_010--Hb_000892_020 Hb_001729_040 Hb_001729_040 Hb_015220_010--Hb_001729_040 Hb_000164_060 Hb_000164_060 Hb_015220_010--Hb_000164_060 Hb_000718_050 Hb_000718_050 Hb_015220_010--Hb_000718_050 Hb_000318_090 Hb_000318_090 Hb_015220_010--Hb_000318_090 Hb_007101_290 Hb_007101_290 Hb_003960_020--Hb_007101_290 Hb_001703_110 Hb_001703_110 Hb_003960_020--Hb_001703_110 Hb_003960_020--Hb_001729_040 Hb_009813_080 Hb_009813_080 Hb_003960_020--Hb_009813_080 Hb_003960_020--Hb_000892_020 Hb_000892_020--Hb_000718_050 Hb_185111_010 Hb_185111_010 Hb_000892_020--Hb_185111_010 Hb_000892_020--Hb_000318_090 Hb_000892_020--Hb_001729_040 Hb_112440_010 Hb_112440_010 Hb_000892_020--Hb_112440_010 Hb_001729_040--Hb_000318_090 Hb_001729_040--Hb_185111_010 Hb_001729_040--Hb_000718_050 Hb_001729_040--Hb_000164_060 Hb_147793_010 Hb_147793_010 Hb_000164_060--Hb_147793_010 Hb_000111_020 Hb_000111_020 Hb_000164_060--Hb_000111_020 Hb_185736_010 Hb_185736_010 Hb_000164_060--Hb_185736_010 Hb_001627_030 Hb_001627_030 Hb_000164_060--Hb_001627_030 Hb_007273_010 Hb_007273_010 Hb_000164_060--Hb_007273_010 Hb_187134_010 Hb_187134_010 Hb_000164_060--Hb_187134_010 Hb_000718_050--Hb_112440_010 Hb_000718_050--Hb_185111_010 Hb_000718_050--Hb_000318_090 Hb_008054_060 Hb_008054_060 Hb_000718_050--Hb_008054_060 Hb_000318_090--Hb_185111_010 Hb_007181_030 Hb_007181_030 Hb_000318_090--Hb_007181_030 Hb_000087_090 Hb_000087_090 Hb_000318_090--Hb_000087_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0238346 0 0.0499484 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.205779 0 0.0624189 0

CAGE analysis