Hb_015279_010

Information

Type -
Description -
Location Contig15279: 11137-19397
Sequence    

Annotation

kegg
ID tcc:TCM_007702
description RING/U-box superfamily protein, putative
nr
ID XP_012072845.1
description PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
swissprot
ID P0CH30
description E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1
trembl
ID A0A067KMS3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05980 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase ring1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13117: 11126-19042 , PASA_asmbl_13119: 11126-12286 , PASA_asmbl_13121: 11126-19042 , PASA_asmbl_13122: 16600-17020
cDNA
(Sanger)
(ID:Location)		 016_M24.ab1: 11150-11900 , 029_M13.ab1: 11150-11777 , 031_C03.ab1: 11150-11898 , 053_J07.ab1: 11158-11924

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015279_010 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
2 Hb_022425_040 0.0601926674 - - PREDICTED: probable RNA methyltransferase At5g51130 [Jatropha curcas]
3 Hb_003787_010 0.0645012735 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
4 Hb_000667_070 0.0671264189 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
5 Hb_004116_190 0.0698160636 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
6 Hb_000920_110 0.0703779412 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
7 Hb_011671_100 0.0705379807 - - 60S ribosomal protein L15 [Populus trichocarpa]
8 Hb_000172_320 0.0710493302 - - PREDICTED: ribosome biogenesis protein TSR3 homolog [Jatropha curcas]
9 Hb_002518_080 0.0736531827 - - PREDICTED: uncharacterized protein LOC105639837 [Jatropha curcas]
10 Hb_000217_030 0.0745884939 - - Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1 [Theobroma cacao]
11 Hb_001504_110 0.0753468183 - - PREDICTED: uncharacterized protein LOC105630336 [Jatropha curcas]
12 Hb_001123_130 0.0754585537 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
13 Hb_002995_020 0.0761469941 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
14 Hb_001766_110 0.0780444096 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
15 Hb_000307_090 0.0786040616 - - hypothetical protein CICLE_v10002475mg [Citrus clementina]
16 Hb_000020_060 0.0790774397 - - PREDICTED: trafficking protein particle complex subunit 4 [Jatropha curcas]
17 Hb_000479_090 0.0791876531 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
18 Hb_000656_240 0.0792262398 - - proteasome subunit alpha type, putative [Ricinus communis]
19 Hb_003125_200 0.0792507412 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]
20 Hb_027472_040 0.0798904085 - - SKP1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_015279_010 Hb_015279_010 Hb_022425_040 Hb_022425_040 Hb_015279_010--Hb_022425_040 Hb_003787_010 Hb_003787_010 Hb_015279_010--Hb_003787_010 Hb_000667_070 Hb_000667_070 Hb_015279_010--Hb_000667_070 Hb_004116_190 Hb_004116_190 Hb_015279_010--Hb_004116_190 Hb_000920_110 Hb_000920_110 Hb_015279_010--Hb_000920_110 Hb_011671_100 Hb_011671_100 Hb_015279_010--Hb_011671_100 Hb_000815_060 Hb_000815_060 Hb_022425_040--Hb_000815_060 Hb_002518_080 Hb_002518_080 Hb_022425_040--Hb_002518_080 Hb_000217_030 Hb_000217_030 Hb_022425_040--Hb_000217_030 Hb_000127_180 Hb_000127_180 Hb_022425_040--Hb_000127_180 Hb_001832_060 Hb_001832_060 Hb_022425_040--Hb_001832_060 Hb_003787_010--Hb_000217_030 Hb_002995_020 Hb_002995_020 Hb_003787_010--Hb_002995_020 Hb_172426_040 Hb_172426_040 Hb_003787_010--Hb_172426_040 Hb_005846_040 Hb_005846_040 Hb_003787_010--Hb_005846_040 Hb_000020_060 Hb_000020_060 Hb_003787_010--Hb_000020_060 Hb_001245_100 Hb_001245_100 Hb_000667_070--Hb_001245_100 Hb_001123_130 Hb_001123_130 Hb_000667_070--Hb_001123_130 Hb_000656_240 Hb_000656_240 Hb_000667_070--Hb_000656_240 Hb_001133_120 Hb_001133_120 Hb_000667_070--Hb_001133_120 Hb_008554_060 Hb_008554_060 Hb_000667_070--Hb_008554_060 Hb_001633_050 Hb_001633_050 Hb_004116_190--Hb_001633_050 Hb_004116_190--Hb_002995_020 Hb_004116_190--Hb_000656_240 Hb_004116_190--Hb_000020_060 Hb_000676_180 Hb_000676_180 Hb_004116_190--Hb_000676_180 Hb_004116_190--Hb_005846_040 Hb_003226_100 Hb_003226_100 Hb_000920_110--Hb_003226_100 Hb_002056_050 Hb_002056_050 Hb_000920_110--Hb_002056_050 Hb_001484_070 Hb_001484_070 Hb_000920_110--Hb_001484_070 Hb_010175_040 Hb_010175_040 Hb_000920_110--Hb_010175_040 Hb_000479_090 Hb_000479_090 Hb_000920_110--Hb_000479_090 Hb_001616_040 Hb_001616_040 Hb_000920_110--Hb_001616_040 Hb_001691_140 Hb_001691_140 Hb_011671_100--Hb_001691_140 Hb_011671_100--Hb_003787_010 Hb_000172_320 Hb_000172_320 Hb_011671_100--Hb_000172_320 Hb_004767_080 Hb_004767_080 Hb_011671_100--Hb_004767_080 Hb_000417_360 Hb_000417_360 Hb_011671_100--Hb_000417_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.1143 25.2205 21.7209 19.9891 23.3582 28.8457
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.079 71.0868 31.7254 23.5449 13.4125

CAGE analysis