Hb_015292_030

Information

Type -
Description -
Location Contig15292: 29915-31885
Sequence    

Annotation

kegg
ID pop:POPTR_0017s14350g
description pentatricopeptide repeat-containing family protein
nr
ID XP_012088121.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
swissprot
ID Q9M891
description Pentatricopeptide repeat-containing protein At3g02490, mitochondrial OS=Arabidopsis thaliana GN=At3g02490 PE=2 SV=1
trembl
ID A0A067JK34
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25637 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015292_030 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
2 Hb_018838_030 0.0686600325 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000032_290 0.0796121603 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
4 Hb_001790_020 0.0813866553 - - PREDICTED: uncharacterized protein LOC105642165 [Jatropha curcas]
5 Hb_002137_020 0.086279212 - - ubiquitin-protein ligase, putative [Ricinus communis]
6 Hb_039946_020 0.0876909522 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003994_240 0.0882786155 - - Mediator subunit 8 isoform 3 [Theobroma cacao]
8 Hb_001789_080 0.0897589899 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
9 Hb_000057_200 0.0929025699 - - PREDICTED: methyltransferase-like protein 22 [Jatropha curcas]
10 Hb_001571_040 0.0932833597 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
11 Hb_000571_120 0.0951005524 - - importin beta-1, putative [Ricinus communis]
12 Hb_004223_090 0.0951470755 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FC isoform X2 [Jatropha curcas]
13 Hb_003159_080 0.095890775 - - PREDICTED: uncharacterized protein LOC105639276 [Jatropha curcas]
14 Hb_005064_060 0.0961103514 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_004223_280 0.0964267525 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
16 Hb_012022_030 0.0969447189 transcription factor TF Family: Alfin-like phd/F-box containing protein, putative [Ricinus communis]
17 Hb_001663_030 0.0971045759 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
18 Hb_063090_010 0.0971824549 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
19 Hb_001477_130 0.1001975196 - - PREDICTED: uncharacterized protein LOC105646871 [Jatropha curcas]
20 Hb_007441_200 0.1009811168 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]

Gene co-expression network

sample Hb_015292_030 Hb_015292_030 Hb_018838_030 Hb_018838_030 Hb_015292_030--Hb_018838_030 Hb_000032_290 Hb_000032_290 Hb_015292_030--Hb_000032_290 Hb_001790_020 Hb_001790_020 Hb_015292_030--Hb_001790_020 Hb_002137_020 Hb_002137_020 Hb_015292_030--Hb_002137_020 Hb_039946_020 Hb_039946_020 Hb_015292_030--Hb_039946_020 Hb_003994_240 Hb_003994_240 Hb_015292_030--Hb_003994_240 Hb_000210_180 Hb_000210_180 Hb_018838_030--Hb_000210_180 Hb_018838_030--Hb_000032_290 Hb_000085_050 Hb_000085_050 Hb_018838_030--Hb_000085_050 Hb_063090_010 Hb_063090_010 Hb_018838_030--Hb_063090_010 Hb_007441_200 Hb_007441_200 Hb_018838_030--Hb_007441_200 Hb_000245_130 Hb_000245_130 Hb_000032_290--Hb_000245_130 Hb_000406_220 Hb_000406_220 Hb_000032_290--Hb_000406_220 Hb_181235_010 Hb_181235_010 Hb_000032_290--Hb_181235_010 Hb_000554_020 Hb_000554_020 Hb_000032_290--Hb_000554_020 Hb_006332_020 Hb_006332_020 Hb_000032_290--Hb_006332_020 Hb_012634_010 Hb_012634_010 Hb_001790_020--Hb_012634_010 Hb_001571_040 Hb_001571_040 Hb_001790_020--Hb_001571_040 Hb_106371_010 Hb_106371_010 Hb_001790_020--Hb_106371_010 Hb_000321_070 Hb_000321_070 Hb_001790_020--Hb_000321_070 Hb_000160_040 Hb_000160_040 Hb_001790_020--Hb_000160_040 Hb_000123_210 Hb_000123_210 Hb_001790_020--Hb_000123_210 Hb_004223_280 Hb_004223_280 Hb_002137_020--Hb_004223_280 Hb_007441_230 Hb_007441_230 Hb_002137_020--Hb_007441_230 Hb_000571_120 Hb_000571_120 Hb_002137_020--Hb_000571_120 Hb_012022_030 Hb_012022_030 Hb_002137_020--Hb_012022_030 Hb_003464_060 Hb_003464_060 Hb_002137_020--Hb_003464_060 Hb_002016_110 Hb_002016_110 Hb_002137_020--Hb_002016_110 Hb_039946_020--Hb_012022_030 Hb_000629_010 Hb_000629_010 Hb_039946_020--Hb_000629_010 Hb_004223_090 Hb_004223_090 Hb_039946_020--Hb_004223_090 Hb_000062_240 Hb_000062_240 Hb_039946_020--Hb_000062_240 Hb_003615_010 Hb_003615_010 Hb_039946_020--Hb_003615_010 Hb_002026_180 Hb_002026_180 Hb_039946_020--Hb_002026_180 Hb_001936_020 Hb_001936_020 Hb_003994_240--Hb_001936_020 Hb_004934_090 Hb_004934_090 Hb_003994_240--Hb_004934_090 Hb_003728_030 Hb_003728_030 Hb_003994_240--Hb_003728_030 Hb_001663_030 Hb_001663_030 Hb_003994_240--Hb_001663_030 Hb_004108_140 Hb_004108_140 Hb_003994_240--Hb_004108_140 Hb_002030_030 Hb_002030_030 Hb_003994_240--Hb_002030_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.25354 4.49236 1.25232 1.92082 5.15115 8.01457
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.37657 6.8581 4.99472 6.68565 2.40185

CAGE analysis