Hb_015292_040

Information

Type -
Description -
Location Contig15292: 33363-42816
Sequence    

Annotation

kegg
ID rcu:RCOM_0596600
description hypothetical protein
nr
ID XP_012088122.1
description PREDICTED: myb-like protein X [Jatropha curcas]
swissprot
ID O94683
description Ribosomal RNA-processing protein 7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp7 PE=3 SV=2
trembl
ID A0A067JNH1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25639 PE=4 SV=1
Gene Ontology
ID GO:0005622
description myb-like protein x

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13148: 36041-36267 , PASA_asmbl_13149: 36858-37213
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015292_040 0.0 - - PREDICTED: myb-like protein X [Jatropha curcas]
2 Hb_004994_080 0.0897404028 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_000211_040 0.0899404046 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
4 Hb_001930_030 0.0984807126 - - PREDICTED: 30S ribosomal protein S10, chloroplastic [Jatropha curcas]
5 Hb_000663_020 0.1026968838 - - PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
6 Hb_001839_020 0.1034893447 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
7 Hb_000364_100 0.1043514546 - - PREDICTED: uncharacterized protein LOC105639739 [Jatropha curcas]
8 Hb_000959_220 0.1044741202 - - zinc finger protein, putative [Ricinus communis]
9 Hb_006555_040 0.1073563549 - - PREDICTED: uncharacterized protein LOC105639405 [Jatropha curcas]
10 Hb_143766_020 0.1093190035 - - putative phospholipase A2 [Gossypium arboreum]
11 Hb_029142_030 0.1101164502 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]
12 Hb_005162_110 0.1114746906 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
13 Hb_005731_110 0.113124078 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
14 Hb_006569_040 0.1145354318 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105650906 [Jatropha curcas]
15 Hb_002870_020 0.1159230852 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X1 [Jatropha curcas]
16 Hb_000436_100 0.1211251739 - - PREDICTED: uncharacterized protein LOC105638514 [Jatropha curcas]
17 Hb_001322_020 0.1214802559 - - PREDICTED: polycomb group protein VERNALIZATION 2-like isoform X2 [Populus euphratica]
18 Hb_007263_010 0.1237143775 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
19 Hb_000010_130 0.1237193578 - - PREDICTED: rhodanese-like domain-containing protein 11, chloroplastic [Pyrus x bretschneideri]
20 Hb_077026_010 0.1244966108 - - PREDICTED: phosphatidylinositol 4-kinase alpha 2 [Jatropha curcas]

Gene co-expression network

sample Hb_015292_040 Hb_015292_040 Hb_004994_080 Hb_004994_080 Hb_015292_040--Hb_004994_080 Hb_000211_040 Hb_000211_040 Hb_015292_040--Hb_000211_040 Hb_001930_030 Hb_001930_030 Hb_015292_040--Hb_001930_030 Hb_000663_020 Hb_000663_020 Hb_015292_040--Hb_000663_020 Hb_001839_020 Hb_001839_020 Hb_015292_040--Hb_001839_020 Hb_000364_100 Hb_000364_100 Hb_015292_040--Hb_000364_100 Hb_007263_010 Hb_007263_010 Hb_004994_080--Hb_007263_010 Hb_004994_080--Hb_000364_100 Hb_000181_060 Hb_000181_060 Hb_004994_080--Hb_000181_060 Hb_011386_050 Hb_011386_050 Hb_004994_080--Hb_011386_050 Hb_005162_110 Hb_005162_110 Hb_004994_080--Hb_005162_110 Hb_006555_040 Hb_006555_040 Hb_004994_080--Hb_006555_040 Hb_000211_040--Hb_006555_040 Hb_000123_140 Hb_000123_140 Hb_000211_040--Hb_000123_140 Hb_000140_440 Hb_000140_440 Hb_000211_040--Hb_000140_440 Hb_000211_040--Hb_004994_080 Hb_000211_040--Hb_007263_010 Hb_001930_030--Hb_006555_040 Hb_005731_110 Hb_005731_110 Hb_001930_030--Hb_005731_110 Hb_000445_070 Hb_000445_070 Hb_001930_030--Hb_000445_070 Hb_001930_030--Hb_004994_080 Hb_000436_100 Hb_000436_100 Hb_001930_030--Hb_000436_100 Hb_000663_020--Hb_005731_110 Hb_002218_020 Hb_002218_020 Hb_000663_020--Hb_002218_020 Hb_001195_270 Hb_001195_270 Hb_000663_020--Hb_001195_270 Hb_077026_010 Hb_077026_010 Hb_000663_020--Hb_077026_010 Hb_000663_020--Hb_005162_110 Hb_003506_030 Hb_003506_030 Hb_000663_020--Hb_003506_030 Hb_000136_030 Hb_000136_030 Hb_001839_020--Hb_000136_030 Hb_001839_020--Hb_000663_020 Hb_001322_020 Hb_001322_020 Hb_001839_020--Hb_001322_020 Hb_001839_020--Hb_077026_010 Hb_001839_020--Hb_005731_110 Hb_000532_100 Hb_000532_100 Hb_000364_100--Hb_000532_100 Hb_000826_030 Hb_000826_030 Hb_000364_100--Hb_000826_030 Hb_001158_160 Hb_001158_160 Hb_000364_100--Hb_001158_160 Hb_000284_130 Hb_000284_130 Hb_000364_100--Hb_000284_130 Hb_000364_100--Hb_011386_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.78854 1.87851 7.19561 2.08109 3.17725 1.88757
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.16477 1.77343 0.551587 1.47833 3.19185

CAGE analysis