Hb_015388_030

Information

Type -
Description -
Location Contig15388: 27342-29489
Sequence    

Annotation

kegg
ID rcu:RCOM_1045360
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.26)
nr
ID XP_002523485.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID P17801
description Putative receptor protein kinase ZmPK1 OS=Zea mays GN=PK1 PE=2 SV=2
trembl
ID B9SBW6
description Serine/threonine-protein kinase OS=Ricinus communis GN=RCOM_1045360 PE=3 SV=1
Gene Ontology
ID GO:0004674
description receptor protein kinase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015388_030 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_010261_010 0.2025795415 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
3 Hb_012404_040 0.2202975249 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Jatropha curcas]
4 Hb_000181_440 0.2355809114 - - -
5 Hb_003096_040 0.2451384414 transcription factor TF Family: HB hypothetical protein POPTR_0005s07290g [Populus trichocarpa]
6 Hb_001269_040 0.2455179649 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_025194_010 0.2554133687 - - PREDICTED: uncharacterized protein LOC105644857 [Jatropha curcas]
8 Hb_020248_010 0.258922828 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
9 Hb_179679_010 0.2666216943 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Fragaria vesca subsp. vesca]
10 Hb_184705_010 0.2689355811 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
11 Hb_003633_140 0.2730464986 - - PREDICTED: uncharacterized protein LOC105647486 isoform X1 [Jatropha curcas]
12 Hb_003107_020 0.2781103168 - - hypothetical protein JCGZ_18656 [Jatropha curcas]
13 Hb_154471_010 0.2802674959 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
14 Hb_007144_010 0.2806352246 - - -
15 Hb_011885_010 0.2862970554 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
16 Hb_000107_320 0.2881369165 - - hypothetical protein POPTR_0004s21930g [Populus trichocarpa]
17 Hb_000640_150 0.2884394833 transcription factor TF Family: WRKY conserved hypothetical protein [Ricinus communis]
18 Hb_001999_190 0.2897925551 - - GDP-mannose transporter, putative [Ricinus communis]
19 Hb_003384_070 0.2905851977 - - PREDICTED: methylesterase 17-like [Populus euphratica]
20 Hb_012760_180 0.2916499988 - - Basic-leucine zipper transcription factor family protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_015388_030 Hb_015388_030 Hb_010261_010 Hb_010261_010 Hb_015388_030--Hb_010261_010 Hb_012404_040 Hb_012404_040 Hb_015388_030--Hb_012404_040 Hb_000181_440 Hb_000181_440 Hb_015388_030--Hb_000181_440 Hb_003096_040 Hb_003096_040 Hb_015388_030--Hb_003096_040 Hb_001269_040 Hb_001269_040 Hb_015388_030--Hb_001269_040 Hb_025194_010 Hb_025194_010 Hb_015388_030--Hb_025194_010 Hb_010261_010--Hb_003096_040 Hb_003633_140 Hb_003633_140 Hb_010261_010--Hb_003633_140 Hb_003525_020 Hb_003525_020 Hb_010261_010--Hb_003525_020 Hb_010261_010--Hb_012404_040 Hb_000538_190 Hb_000538_190 Hb_010261_010--Hb_000538_190 Hb_010261_010--Hb_001269_040 Hb_000640_150 Hb_000640_150 Hb_012404_040--Hb_000640_150 Hb_012404_040--Hb_001269_040 Hb_001351_040 Hb_001351_040 Hb_012404_040--Hb_001351_040 Hb_009848_030 Hb_009848_030 Hb_012404_040--Hb_009848_030 Hb_028795_010 Hb_028795_010 Hb_000181_440--Hb_028795_010 Hb_000181_440--Hb_003096_040 Hb_179679_010 Hb_179679_010 Hb_000181_440--Hb_179679_010 Hb_000181_440--Hb_010261_010 Hb_033926_010 Hb_033926_010 Hb_000181_440--Hb_033926_010 Hb_000181_440--Hb_003633_140 Hb_031527_070 Hb_031527_070 Hb_003096_040--Hb_031527_070 Hb_153161_010 Hb_153161_010 Hb_003096_040--Hb_153161_010 Hb_000175_350 Hb_000175_350 Hb_003096_040--Hb_000175_350 Hb_178127_010 Hb_178127_010 Hb_003096_040--Hb_178127_010 Hb_005510_010 Hb_005510_010 Hb_003096_040--Hb_005510_010 Hb_002686_280 Hb_002686_280 Hb_001269_040--Hb_002686_280 Hb_002273_080 Hb_002273_080 Hb_001269_040--Hb_002273_080 Hb_002273_050 Hb_002273_050 Hb_001269_040--Hb_002273_050 Hb_001338_050 Hb_001338_050 Hb_001269_040--Hb_001338_050 Hb_001269_040--Hb_025194_010 Hb_003175_020 Hb_003175_020 Hb_025194_010--Hb_003175_020 Hb_025194_010--Hb_001338_050 Hb_006738_060 Hb_006738_060 Hb_025194_010--Hb_006738_060 Hb_141142_010 Hb_141142_010 Hb_025194_010--Hb_141142_010 Hb_007144_010 Hb_007144_010 Hb_025194_010--Hb_007144_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.117819 0.356945 0 0.0500614 0.149412 0.0660808
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0939661 0

CAGE analysis