Hb_015401_020

Information

Type -
Description -
Location Contig15401: 18005-24964
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02830g
description hypothetical protein
nr
ID XP_006375780.1
description hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FWB6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s02830g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13254: 25503-25700
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015401_020 0.0 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
2 Hb_000076_290 0.0750921423 - - translation factor sui1, putative [Ricinus communis]
3 Hb_000174_200 0.0850864276 - - PREDICTED: pre-mRNA-splicing factor 38 [Jatropha curcas]
4 Hb_001274_020 0.0898504826 desease resistance Gene Name: ABC_tran ABC transporter GCN1 [Hevea brasiliensis]
5 Hb_001439_180 0.0906592801 - - hypothetical protein POPTR_0004s13090g [Populus trichocarpa]
6 Hb_005314_010 0.092607127 - - nucleotide binding protein, putative [Ricinus communis]
7 Hb_002270_010 0.0936194036 - - Chaperone protein dnaJ, putative [Ricinus communis]
8 Hb_029281_010 0.0980179995 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
9 Hb_000172_550 0.098980663 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
10 Hb_001817_180 0.1026442736 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
11 Hb_024399_010 0.1073240965 - - PREDICTED: uncharacterized protein LOC105649031 [Jatropha curcas]
12 Hb_002169_010 0.1099900238 - - PREDICTED: la-related protein 6B [Jatropha curcas]
13 Hb_000029_160 0.1127772442 - - Nitrilase, putative [Ricinus communis]
14 Hb_000920_040 0.1130723236 - - PREDICTED: F-box protein At1g30790-like [Jatropha curcas]
15 Hb_001431_070 0.1136305299 - - PREDICTED: large proline-rich protein bag6-like isoform X2 [Jatropha curcas]
16 Hb_183510_010 0.1137118512 - - PREDICTED: RPM1-interacting protein 4-like isoform X2 [Jatropha curcas]
17 Hb_000735_120 0.1146534408 - - PREDICTED: pentatricopeptide repeat-containing protein At3g25210, mitochondrial [Jatropha curcas]
18 Hb_000367_290 0.1164325335 - - PREDICTED: uncharacterized protein LOC105640583 [Jatropha curcas]
19 Hb_004032_350 0.1166824365 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
20 Hb_005147_110 0.1175767038 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]

Gene co-expression network

sample Hb_015401_020 Hb_015401_020 Hb_000076_290 Hb_000076_290 Hb_015401_020--Hb_000076_290 Hb_000174_200 Hb_000174_200 Hb_015401_020--Hb_000174_200 Hb_001274_020 Hb_001274_020 Hb_015401_020--Hb_001274_020 Hb_001439_180 Hb_001439_180 Hb_015401_020--Hb_001439_180 Hb_005314_010 Hb_005314_010 Hb_015401_020--Hb_005314_010 Hb_002270_010 Hb_002270_010 Hb_015401_020--Hb_002270_010 Hb_000076_290--Hb_000174_200 Hb_004032_350 Hb_004032_350 Hb_000076_290--Hb_004032_350 Hb_000640_210 Hb_000640_210 Hb_000076_290--Hb_000640_210 Hb_000076_290--Hb_001439_180 Hb_000076_290--Hb_002270_010 Hb_000174_200--Hb_000640_210 Hb_000174_200--Hb_004032_350 Hb_000322_170 Hb_000322_170 Hb_000174_200--Hb_000322_170 Hb_005144_040 Hb_005144_040 Hb_000174_200--Hb_005144_040 Hb_000500_040 Hb_000500_040 Hb_001274_020--Hb_000500_040 Hb_000138_040 Hb_000138_040 Hb_001274_020--Hb_000138_040 Hb_001516_100 Hb_001516_100 Hb_001274_020--Hb_001516_100 Hb_000836_360 Hb_000836_360 Hb_001274_020--Hb_000836_360 Hb_000808_180 Hb_000808_180 Hb_001274_020--Hb_000808_180 Hb_001034_020 Hb_001034_020 Hb_001439_180--Hb_001034_020 Hb_002675_190 Hb_002675_190 Hb_001439_180--Hb_002675_190 Hb_029281_010 Hb_029281_010 Hb_001439_180--Hb_029281_010 Hb_000331_480 Hb_000331_480 Hb_001439_180--Hb_000331_480 Hb_004931_040 Hb_004931_040 Hb_001439_180--Hb_004931_040 Hb_000001_180 Hb_000001_180 Hb_005314_010--Hb_000001_180 Hb_002818_040 Hb_002818_040 Hb_005314_010--Hb_002818_040 Hb_000413_130 Hb_000413_130 Hb_005314_010--Hb_000413_130 Hb_024399_010 Hb_024399_010 Hb_005314_010--Hb_024399_010 Hb_005914_230 Hb_005914_230 Hb_005314_010--Hb_005914_230 Hb_005314_010--Hb_029281_010 Hb_002270_010--Hb_005144_040 Hb_000172_550 Hb_000172_550 Hb_002270_010--Hb_000172_550 Hb_000735_120 Hb_000735_120 Hb_002270_010--Hb_000735_120 Hb_002270_010--Hb_001439_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.23637 3.13915 0.104705 0.699559 4.32091 4.60314
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.41546 1.61501 2.58519 1.05856 0.281848

CAGE analysis