Hb_015430_010

Information

Type -
Description -
Location Contig15430: 10752-13466
Sequence    

Annotation

kegg
ID pop:POPTR_0010s23960g
description POPTRDRAFT_822618; hypothetical protein
nr
ID XP_011024283.1
description PREDICTED: uncharacterized protein LOC105125506 isoform X2 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A9PAB2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s23960g PE=2 SV=1
Gene Ontology
ID GO:0009507
description inorganic polyphosphate atp-nad kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13328: 10731-13405 , PASA_asmbl_13329: 11304-11507
cDNA
(Sanger)
(ID:Location)		 006_D07.ab1: 10734-13353

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015430_010 0.0 - - PREDICTED: uncharacterized protein LOC105125506 isoform X2 [Populus euphratica]
2 Hb_003581_300 0.1317658831 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
3 Hb_001105_090 0.1475216877 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
4 Hb_006018_060 0.1603830261 - - Zinc finger SWIM domain-containing protein 7 isoform 1 [Theobroma cacao]
5 Hb_000178_120 0.1646515562 - - PREDICTED: histone H2B [Jatropha curcas]
6 Hb_002042_080 0.167380476 rubber biosynthesis Gene Name: Mevalonate kinase mevalonate kinase [Hevea brasiliensis]
7 Hb_009778_040 0.1716266068 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
8 Hb_116420_020 0.1752871051 - - Phytosulfokines 3 precursor family protein [Populus trichocarpa]
9 Hb_008215_030 0.1811781366 - - hypothetical protein 3 [Hevea brasiliensis]
10 Hb_004209_030 0.1817942961 - - PREDICTED: (DL)-glycerol-3-phosphatase 2 isoform X1 [Jatropha curcas]
11 Hb_000031_080 0.1829028732 - - PREDICTED: uncharacterized protein LOC105637482 [Jatropha curcas]
12 Hb_000975_230 0.1843184766 - - hypothetical protein ZEAMMB73_864543 [Zea mays]
13 Hb_007441_260 0.1850281786 - - PREDICTED: ATP synthase subunit delta', mitochondrial-like [Jatropha curcas]
14 Hb_000030_200 0.1854728051 - - PREDICTED: early nodulin-93-like [Populus euphratica]
15 Hb_007313_080 0.1867334584 - - hypothetical protein CICLE_v10002804mg [Citrus clementina]
16 Hb_001059_120 0.1870207024 - - NADH dehydrogenase, putative [Ricinus communis]
17 Hb_147752_010 0.1901908776 - - PREDICTED: 40S ribosomal protein S9-2-like isoform X1 [Populus euphratica]
18 Hb_002391_220 0.1906893967 - - PREDICTED: UPF0548 protein At2g17695 [Jatropha curcas]
19 Hb_000445_490 0.1907754592 - - -
20 Hb_002774_050 0.1924907628 - - PREDICTED: uncharacterized protein LOC105630601 [Jatropha curcas]

Gene co-expression network

sample Hb_015430_010 Hb_015430_010 Hb_003581_300 Hb_003581_300 Hb_015430_010--Hb_003581_300 Hb_001105_090 Hb_001105_090 Hb_015430_010--Hb_001105_090 Hb_006018_060 Hb_006018_060 Hb_015430_010--Hb_006018_060 Hb_000178_120 Hb_000178_120 Hb_015430_010--Hb_000178_120 Hb_002042_080 Hb_002042_080 Hb_015430_010--Hb_002042_080 Hb_009778_040 Hb_009778_040 Hb_015430_010--Hb_009778_040 Hb_003581_300--Hb_006018_060 Hb_054074_010 Hb_054074_010 Hb_003581_300--Hb_054074_010 Hb_002260_030 Hb_002260_030 Hb_003581_300--Hb_002260_030 Hb_002157_040 Hb_002157_040 Hb_003581_300--Hb_002157_040 Hb_000030_200 Hb_000030_200 Hb_003581_300--Hb_000030_200 Hb_001105_090--Hb_009778_040 Hb_004429_110 Hb_004429_110 Hb_001105_090--Hb_004429_110 Hb_007313_080 Hb_007313_080 Hb_001105_090--Hb_007313_080 Hb_120823_010 Hb_120823_010 Hb_001105_090--Hb_120823_010 Hb_000809_060 Hb_000809_060 Hb_001105_090--Hb_000809_060 Hb_002081_030 Hb_002081_030 Hb_001105_090--Hb_002081_030 Hb_006018_060--Hb_002157_040 Hb_000676_340 Hb_000676_340 Hb_006018_060--Hb_000676_340 Hb_006018_060--Hb_000178_120 Hb_006018_060--Hb_002260_030 Hb_023344_050 Hb_023344_050 Hb_000178_120--Hb_023344_050 Hb_007441_260 Hb_007441_260 Hb_000178_120--Hb_007441_260 Hb_002774_050 Hb_002774_050 Hb_000178_120--Hb_002774_050 Hb_010402_050 Hb_010402_050 Hb_000178_120--Hb_010402_050 Hb_000178_120--Hb_002042_080 Hb_002243_060 Hb_002243_060 Hb_000178_120--Hb_002243_060 Hb_001059_120 Hb_001059_120 Hb_002042_080--Hb_001059_120 Hb_147752_010 Hb_147752_010 Hb_002042_080--Hb_147752_010 Hb_002042_080--Hb_002243_060 Hb_002042_080--Hb_007441_260 Hb_001240_020 Hb_001240_020 Hb_002042_080--Hb_001240_020 Hb_009778_040--Hb_002081_030 Hb_002838_030 Hb_002838_030 Hb_009778_040--Hb_002838_030 Hb_003020_330 Hb_003020_330 Hb_009778_040--Hb_003020_330 Hb_006588_080 Hb_006588_080 Hb_009778_040--Hb_006588_080 Hb_009778_040--Hb_120823_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.514269 2.09304 8.5005 13.8943 0.279726 1.97263
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.2722 36.8455 14.1878 9.62032 6.15728

CAGE analysis