Hb_015456_020

Information

Type -
Description -
Location Contig15456: 26246-34904
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015456_020 0.0 - - -
2 Hb_000300_380 0.1004498132 - - -
3 Hb_005333_040 0.1239718668 - - PREDICTED: dnaJ homolog subfamily C member 5 [Prunus mume]
4 Hb_001158_030 0.1255149061 - - -
5 Hb_004204_190 0.1363494921 - - putative iron-sulfur cluster biosynthesis protein Isd11 [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
6 Hb_000183_070 0.1445774566 - - -
7 Hb_000014_100 0.1495104112 - - -
8 Hb_008453_020 0.1506912228 - - PREDICTED: E3 ubiquitin-protein ligase ATL23 [Jatropha curcas]
9 Hb_006452_060 0.1517756093 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
10 Hb_000958_010 0.1526734117 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005714_040 0.1533753203 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005214_110 0.1535701923 - - -
13 Hb_005015_010 0.1546704496 - - PREDICTED: programmed cell death protein 2-like [Jatropha curcas]
14 Hb_003751_110 0.1554929816 - - unknown [Lotus japonicus]
15 Hb_004032_240 0.1557968443 - - electron transporter, putative [Ricinus communis]
16 Hb_033080_010 0.1570405784 - - -
17 Hb_001198_090 0.1571127325 - - PREDICTED: uncharacterized protein LOC105633343 [Jatropha curcas]
18 Hb_006824_020 0.1586919282 - - PREDICTED: thioredoxin domain-containing protein 9 homolog [Jatropha curcas]
19 Hb_002400_390 0.1617432156 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
20 Hb_006501_150 0.1619192155 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_015456_020 Hb_015456_020 Hb_000300_380 Hb_000300_380 Hb_015456_020--Hb_000300_380 Hb_005333_040 Hb_005333_040 Hb_015456_020--Hb_005333_040 Hb_001158_030 Hb_001158_030 Hb_015456_020--Hb_001158_030 Hb_004204_190 Hb_004204_190 Hb_015456_020--Hb_004204_190 Hb_000183_070 Hb_000183_070 Hb_015456_020--Hb_000183_070 Hb_000014_100 Hb_000014_100 Hb_015456_020--Hb_000014_100 Hb_000922_150 Hb_000922_150 Hb_000300_380--Hb_000922_150 Hb_017438_020 Hb_017438_020 Hb_000300_380--Hb_017438_020 Hb_000300_380--Hb_004204_190 Hb_000958_010 Hb_000958_010 Hb_000300_380--Hb_000958_010 Hb_000300_380--Hb_005333_040 Hb_033080_010 Hb_033080_010 Hb_005333_040--Hb_033080_010 Hb_006501_150 Hb_006501_150 Hb_005333_040--Hb_006501_150 Hb_000270_840 Hb_000270_840 Hb_005333_040--Hb_000270_840 Hb_000538_020 Hb_000538_020 Hb_005333_040--Hb_000538_020 Hb_000329_690 Hb_000329_690 Hb_005333_040--Hb_000329_690 Hb_004970_200 Hb_004970_200 Hb_005333_040--Hb_004970_200 Hb_027556_010 Hb_027556_010 Hb_001158_030--Hb_027556_010 Hb_001186_060 Hb_001186_060 Hb_001158_030--Hb_001186_060 Hb_011716_040 Hb_011716_040 Hb_001158_030--Hb_011716_040 Hb_001930_070 Hb_001930_070 Hb_001158_030--Hb_001930_070 Hb_005214_110 Hb_005214_110 Hb_001158_030--Hb_005214_110 Hb_004204_190--Hb_005333_040 Hb_006452_060 Hb_006452_060 Hb_004204_190--Hb_006452_060 Hb_001220_040 Hb_001220_040 Hb_004204_190--Hb_001220_040 Hb_001214_030 Hb_001214_030 Hb_004204_190--Hb_001214_030 Hb_005714_040 Hb_005714_040 Hb_000183_070--Hb_005714_040 Hb_001437_300 Hb_001437_300 Hb_000183_070--Hb_001437_300 Hb_005015_010 Hb_005015_010 Hb_000183_070--Hb_005015_010 Hb_000183_070--Hb_006501_150 Hb_006452_190 Hb_006452_190 Hb_000183_070--Hb_006452_190 Hb_005389_140 Hb_005389_140 Hb_000183_070--Hb_005389_140 Hb_007245_090 Hb_007245_090 Hb_000014_100--Hb_007245_090 Hb_006499_010 Hb_006499_010 Hb_000014_100--Hb_006499_010 Hb_000014_100--Hb_001930_070 Hb_003747_240 Hb_003747_240 Hb_000014_100--Hb_003747_240 Hb_000014_100--Hb_011716_040 Hb_000014_100--Hb_001158_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.975449 0.31313 0.128146 0.0447246 2.13988 0.486307
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.18224 1.02752 0.622923 0.158117 0.0988005

CAGE analysis