Hb_015481_010

Information

Type transcription factor
Description TF Family: PLATZ
Location Contig15481: 6369-9059
Sequence    

Annotation

kegg
ID mtr:MTR_5g030130
description hypothetical protein
nr
ID ACJ84547.1
description unknown [Medicago truncatula]
swissprot
ID -
description -
trembl
ID B7FIG8
description Uncharacterized protein OS=Medicago truncatula PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13414: 6179-8926 , PASA_asmbl_13415: 7606-8094
cDNA
(Sanger)
(ID:Location)		 048_I01.ab1: 6833-8860

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015481_010 0.0 transcription factor TF Family: PLATZ unknown [Medicago truncatula]
2 Hb_181810_010 0.1644137714 - - hypothetical protein JCGZ_14167 [Jatropha curcas]
3 Hb_181824_010 0.1650194868 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
4 Hb_077995_010 0.165622531 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
5 Hb_005568_060 0.1688222764 - - PREDICTED: mitogen-activated protein kinase 3 [Jatropha curcas]
6 Hb_010589_130 0.17430097 - - PREDICTED: uncharacterized protein LOC104884346 [Beta vulgaris subsp. vulgaris]
7 Hb_000465_100 0.1789969981 - - catalytic, putative [Ricinus communis]
8 Hb_004787_100 0.1802347048 - - PREDICTED: transcription factor bHLH47 [Jatropha curcas]
9 Hb_000284_180 0.1815856151 - - hypothetical protein EUGRSUZ_B01865 [Eucalyptus grandis]
10 Hb_000819_040 0.1857057784 - - ATP binding protein, putative [Ricinus communis]
11 Hb_001989_060 0.1868468012 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105634562 isoform X2 [Jatropha curcas]
12 Hb_000045_140 0.1877826161 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
13 Hb_007951_120 0.1878098262 - - PREDICTED: uncharacterized protein At1g15400 [Populus euphratica]
14 Hb_033149_020 0.1898956952 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
15 Hb_009040_010 0.1906102776 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
16 Hb_000059_260 0.1940475481 - - PREDICTED: LOW QUALITY PROTEIN: peroxidase 60 [Jatropha curcas]
17 Hb_061908_030 0.1949022168 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
18 Hb_008864_080 0.1960067141 - - PREDICTED: uncharacterized protein LOC105631804 [Jatropha curcas]
19 Hb_001345_030 0.1972058881 - - hypothetical protein POPTR_0007s10390g, partial [Populus trichocarpa]
20 Hb_002217_270 0.1975880313 - - PREDICTED: desiccation-related protein PCC13-62-like [Jatropha curcas]

Gene co-expression network

sample Hb_015481_010 Hb_015481_010 Hb_181810_010 Hb_181810_010 Hb_015481_010--Hb_181810_010 Hb_181824_010 Hb_181824_010 Hb_015481_010--Hb_181824_010 Hb_077995_010 Hb_077995_010 Hb_015481_010--Hb_077995_010 Hb_005568_060 Hb_005568_060 Hb_015481_010--Hb_005568_060 Hb_010589_130 Hb_010589_130 Hb_015481_010--Hb_010589_130 Hb_000465_100 Hb_000465_100 Hb_015481_010--Hb_000465_100 Hb_010964_010 Hb_010964_010 Hb_181810_010--Hb_010964_010 Hb_000819_040 Hb_000819_040 Hb_181810_010--Hb_000819_040 Hb_004032_220 Hb_004032_220 Hb_181810_010--Hb_004032_220 Hb_000340_060 Hb_000340_060 Hb_181810_010--Hb_000340_060 Hb_000059_260 Hb_000059_260 Hb_181810_010--Hb_000059_260 Hb_002960_100 Hb_002960_100 Hb_181810_010--Hb_002960_100 Hb_181824_010--Hb_005568_060 Hb_033149_020 Hb_033149_020 Hb_181824_010--Hb_033149_020 Hb_001846_040 Hb_001846_040 Hb_181824_010--Hb_001846_040 Hb_000045_140 Hb_000045_140 Hb_181824_010--Hb_000045_140 Hb_016404_010 Hb_016404_010 Hb_181824_010--Hb_016404_010 Hb_138628_010 Hb_138628_010 Hb_181824_010--Hb_138628_010 Hb_001345_030 Hb_001345_030 Hb_077995_010--Hb_001345_030 Hb_077995_010--Hb_000465_100 Hb_000397_090 Hb_000397_090 Hb_077995_010--Hb_000397_090 Hb_000363_110 Hb_000363_110 Hb_077995_010--Hb_000363_110 Hb_000247_150 Hb_000247_150 Hb_077995_010--Hb_000247_150 Hb_013720_010 Hb_013720_010 Hb_077995_010--Hb_013720_010 Hb_005568_060--Hb_001846_040 Hb_004787_100 Hb_004787_100 Hb_005568_060--Hb_004787_100 Hb_005568_060--Hb_016404_010 Hb_009247_020 Hb_009247_020 Hb_005568_060--Hb_009247_020 Hb_006483_050 Hb_006483_050 Hb_005568_060--Hb_006483_050 Hb_078901_010 Hb_078901_010 Hb_010589_130--Hb_078901_010 Hb_000434_050 Hb_000434_050 Hb_010589_130--Hb_000434_050 Hb_009040_010 Hb_009040_010 Hb_010589_130--Hb_009040_010 Hb_003375_080 Hb_003375_080 Hb_010589_130--Hb_003375_080 Hb_102100_010 Hb_102100_010 Hb_010589_130--Hb_102100_010 Hb_010589_130--Hb_181824_010 Hb_001247_010 Hb_001247_010 Hb_000465_100--Hb_001247_010 Hb_006907_020 Hb_006907_020 Hb_000465_100--Hb_006907_020 Hb_004924_030 Hb_004924_030 Hb_000465_100--Hb_004924_030 Hb_000465_100--Hb_001345_030 Hb_000465_100--Hb_000247_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
53.4286 1312.31 502.211 71.7895 72.3979 77.5143
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.63704 20.5763 3.08185 51.6755 82.5439

CAGE analysis