Hb_015531_030

Information

Type -
Description -
Location Contig15531: 38386-41818
Sequence    

Annotation

kegg
ID rcu:RCOM_0274280
description hypothetical protein
nr
ID XP_002533992.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T6X3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0274280 PE=4 SV=1
Gene Ontology
ID GO:0009535
description death domain-associated protein 6-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13488: 19864-41814
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015531_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001959_240 0.1004309397 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial [Jatropha curcas]
3 Hb_164926_010 0.1371854486 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
4 Hb_002105_010 0.1417937235 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001408_030 0.1427655607 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
6 Hb_008092_050 0.1444209018 - - PREDICTED: uncharacterized protein LOC105142434 [Populus euphratica]
7 Hb_004466_050 0.1453742497 - - PREDICTED: uncharacterized protein LOC105649250, partial [Jatropha curcas]
8 Hb_005271_160 0.1459307231 - - PREDICTED: uncharacterized protein LOC105645844 [Jatropha curcas]
9 Hb_006911_070 0.1459965928 - - 50S ribosomal protein L1p, putative [Ricinus communis]
10 Hb_000866_340 0.1505480139 - - DNA binding protein, putative [Ricinus communis]
11 Hb_007894_190 0.1554946309 - - PREDICTED: uncharacterized protein LOC105632935 [Jatropha curcas]
12 Hb_001541_100 0.1599776859 - - PREDICTED: uncharacterized protein LOC105644690 [Jatropha curcas]
13 Hb_031042_060 0.1617674407 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
14 Hb_005618_150 0.1620875799 - - PREDICTED: protein translocase subunit SecA, chloroplastic [Jatropha curcas]
15 Hb_001454_150 0.1626167366 - - isoleucyl tRNA synthetase, putative [Ricinus communis]
16 Hb_004116_160 0.1632714202 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
17 Hb_001907_070 0.1642438275 - - 50S ribosomal protein L1p, putative [Ricinus communis]
18 Hb_001307_040 0.1693873777 - - PREDICTED: AT-rich interactive domain-containing protein 4B [Jatropha curcas]
19 Hb_004542_020 0.1694433565 - - hypothetical chloroplast RF1 [Hevea brasiliensis]
20 Hb_012098_150 0.171210688 - - ARC5 protein [Manihot esculenta]

Gene co-expression network

sample Hb_015531_030 Hb_015531_030 Hb_001959_240 Hb_001959_240 Hb_015531_030--Hb_001959_240 Hb_164926_010 Hb_164926_010 Hb_015531_030--Hb_164926_010 Hb_002105_010 Hb_002105_010 Hb_015531_030--Hb_002105_010 Hb_001408_030 Hb_001408_030 Hb_015531_030--Hb_001408_030 Hb_008092_050 Hb_008092_050 Hb_015531_030--Hb_008092_050 Hb_004466_050 Hb_004466_050 Hb_015531_030--Hb_004466_050 Hb_006911_070 Hb_006911_070 Hb_001959_240--Hb_006911_070 Hb_031042_060 Hb_031042_060 Hb_001959_240--Hb_031042_060 Hb_006618_070 Hb_006618_070 Hb_001959_240--Hb_006618_070 Hb_001454_150 Hb_001454_150 Hb_001959_240--Hb_001454_150 Hb_002498_170 Hb_002498_170 Hb_001959_240--Hb_002498_170 Hb_000803_220 Hb_000803_220 Hb_164926_010--Hb_000803_220 Hb_007894_190 Hb_007894_190 Hb_164926_010--Hb_007894_190 Hb_002005_040 Hb_002005_040 Hb_164926_010--Hb_002005_040 Hb_005618_150 Hb_005618_150 Hb_164926_010--Hb_005618_150 Hb_004837_210 Hb_004837_210 Hb_164926_010--Hb_004837_210 Hb_007576_180 Hb_007576_180 Hb_164926_010--Hb_007576_180 Hb_012098_150 Hb_012098_150 Hb_002105_010--Hb_012098_150 Hb_004116_160 Hb_004116_160 Hb_002105_010--Hb_004116_160 Hb_000676_060 Hb_000676_060 Hb_002105_010--Hb_000676_060 Hb_066967_020 Hb_066967_020 Hb_002105_010--Hb_066967_020 Hb_006326_050 Hb_006326_050 Hb_002105_010--Hb_006326_050 Hb_005271_160 Hb_005271_160 Hb_002105_010--Hb_005271_160 Hb_001408_030--Hb_008092_050 Hb_008092_060 Hb_008092_060 Hb_001408_030--Hb_008092_060 Hb_001437_120 Hb_001437_120 Hb_001408_030--Hb_001437_120 Hb_003929_220 Hb_003929_220 Hb_001408_030--Hb_003929_220 Hb_004254_100 Hb_004254_100 Hb_001408_030--Hb_004254_100 Hb_001396_240 Hb_001396_240 Hb_001408_030--Hb_001396_240 Hb_008092_050--Hb_008092_060 Hb_008092_050--Hb_005618_150 Hb_001307_040 Hb_001307_040 Hb_008092_050--Hb_001307_040 Hb_008092_050--Hb_001437_120 Hb_008092_050--Hb_006911_070 Hb_004466_050--Hb_001396_240 Hb_052128_010 Hb_052128_010 Hb_004466_050--Hb_052128_010 Hb_004466_050--Hb_001408_030 Hb_004466_050--Hb_008092_060 Hb_004466_050--Hb_164926_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2439 5.3944 31.4475 11.0329 10.4521 18.2654
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.65726 1.8092 1.27691 7.39338 33.9351

CAGE analysis