Hb_015675_030

Information

Type -
Description -
Location Contig15675: 35915-47379
Sequence    

Annotation

kegg
ID rcu:RCOM_0658900
description uridylate kinase plant, putative (EC:2.7.4.10)
nr
ID XP_012083770.1
description PREDICTED: UMP-CMP kinase 3 isoform X2 [Jatropha curcas]
swissprot
ID O04905
description UMP-CMP kinase 3 OS=Arabidopsis thaliana GN=UMK3 PE=1 SV=1
trembl
ID A0A067K9F1
description UMP-CMP kinase OS=Jatropha curcas GN=JCGZ_14686 PE=3 SV=1
Gene Ontology
ID GO:0005634
description ump-cmp kinase 3-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13632: 24479-47317
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015675_030 0.0 - - PREDICTED: UMP-CMP kinase 3 isoform X2 [Jatropha curcas]
2 Hb_008699_030 0.1198921254 - - hypothetical protein CISIN_1g017963mg [Citrus sinensis]
3 Hb_001142_010 0.13423948 - - PREDICTED: alcohol dehydrogenase-like 6 [Jatropha curcas]
4 Hb_000240_030 0.1350260254 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001195_070 0.1383285924 - - PREDICTED: protein RER1B-like [Jatropha curcas]
6 Hb_003453_050 0.1394015646 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
7 Hb_000381_010 0.1426576971 - - PREDICTED: arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like [Jatropha curcas]
8 Hb_000671_130 0.1429985812 - - PREDICTED: CMP-sialic acid transporter 2 isoform X2 [Jatropha curcas]
9 Hb_003103_010 0.1434399014 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003207_020 0.1488341986 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
11 Hb_091349_010 0.153240796 - - hypothetical protein EUGRSUZ_C02287 [Eucalyptus grandis]
12 Hb_002154_110 0.1549240078 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
13 Hb_000946_110 0.1585928637 - - GTP cyclohydrolase I, putative [Ricinus communis]
14 Hb_011249_020 0.1591688353 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
15 Hb_000300_410 0.1606995312 - - hypothetical protein POPTR_0013s05860g [Populus trichocarpa]
16 Hb_027073_010 0.1610359019 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
17 Hb_002955_020 0.1613701413 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
18 Hb_004158_020 0.1614851934 - - Rab1 [Hevea brasiliensis]
19 Hb_001663_040 0.1630626914 - - hypothetical protein B456_007G162000 [Gossypium raimondii]
20 Hb_000049_160 0.1635458329 - - tyrosine decarboxylase family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_015675_030 Hb_015675_030 Hb_008699_030 Hb_008699_030 Hb_015675_030--Hb_008699_030 Hb_001142_010 Hb_001142_010 Hb_015675_030--Hb_001142_010 Hb_000240_030 Hb_000240_030 Hb_015675_030--Hb_000240_030 Hb_001195_070 Hb_001195_070 Hb_015675_030--Hb_001195_070 Hb_003453_050 Hb_003453_050 Hb_015675_030--Hb_003453_050 Hb_000381_010 Hb_000381_010 Hb_015675_030--Hb_000381_010 Hb_008699_030--Hb_000240_030 Hb_008699_030--Hb_001195_070 Hb_003207_020 Hb_003207_020 Hb_008699_030--Hb_003207_020 Hb_000946_110 Hb_000946_110 Hb_008699_030--Hb_000946_110 Hb_001124_100 Hb_001124_100 Hb_008699_030--Hb_001124_100 Hb_001142_010--Hb_000381_010 Hb_001953_080 Hb_001953_080 Hb_001142_010--Hb_001953_080 Hb_000106_030 Hb_000106_030 Hb_001142_010--Hb_000106_030 Hb_010288_060 Hb_010288_060 Hb_001142_010--Hb_010288_060 Hb_001142_010--Hb_000946_110 Hb_000590_120 Hb_000590_120 Hb_000240_030--Hb_000590_120 Hb_066842_010 Hb_066842_010 Hb_000240_030--Hb_066842_010 Hb_006683_070 Hb_006683_070 Hb_000240_030--Hb_006683_070 Hb_011249_020 Hb_011249_020 Hb_000240_030--Hb_011249_020 Hb_002392_010 Hb_002392_010 Hb_000240_030--Hb_002392_010 Hb_002110_100 Hb_002110_100 Hb_000240_030--Hb_002110_100 Hb_000175_260 Hb_000175_260 Hb_001195_070--Hb_000175_260 Hb_001584_240 Hb_001584_240 Hb_001195_070--Hb_001584_240 Hb_003103_010 Hb_003103_010 Hb_001195_070--Hb_003103_010 Hb_000671_130 Hb_000671_130 Hb_001195_070--Hb_000671_130 Hb_000622_290 Hb_000622_290 Hb_003453_050--Hb_000622_290 Hb_001946_380 Hb_001946_380 Hb_003453_050--Hb_001946_380 Hb_011606_020 Hb_011606_020 Hb_003453_050--Hb_011606_020 Hb_000365_370 Hb_000365_370 Hb_003453_050--Hb_000365_370 Hb_007441_080 Hb_007441_080 Hb_003453_050--Hb_007441_080 Hb_001671_030 Hb_001671_030 Hb_003453_050--Hb_001671_030 Hb_000656_330 Hb_000656_330 Hb_000381_010--Hb_000656_330 Hb_000381_010--Hb_000946_110 Hb_000381_010--Hb_000106_030 Hb_000381_010--Hb_010288_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.61073 3.30055 19.619 90.0828 5.63882 13.3862
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.6777 28.235 31.4165 18.514 64.7589

CAGE analysis