Hb_015690_020

Information

Type -
Description -
Location Contig15690: 9867-13736
Sequence    

Annotation

kegg
ID pop:POPTR_0019s098401
description hypothetical protein
nr
ID XP_012080079.1
description PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID A0A067LAU1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17198 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein suppressor of npr1- constitutive 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13662: 7603-9371 , PASA_asmbl_13663: 10238-10737 , PASA_asmbl_13665: 12798-13237
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015690_020 0.0 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
2 Hb_000419_060 0.1602757132 - - PREDICTED: patatin-like protein 6 [Jatropha curcas]
3 Hb_001969_090 0.1644856684 - - plastid ATP/ADP transport protein 2 [Manihot esculenta]
4 Hb_003442_070 0.1671938366 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 [Jatropha curcas]
5 Hb_002835_180 0.1717463727 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_000260_290 0.1746849347 - - PREDICTED: protein MTL1-like isoform X1 [Jatropha curcas]
7 Hb_003052_220 0.1859315487 - - -
8 Hb_005501_050 0.1884994325 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_001619_080 0.1889050517 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000975_360 0.1915692341 - - conserved hypothetical protein [Ricinus communis]
11 Hb_009510_040 0.1928499043 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
12 Hb_115241_010 0.1950581451 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
13 Hb_000369_020 0.1955221242 - - PREDICTED: probable fructokinase-7 [Jatropha curcas]
14 Hb_003209_200 0.1959077517 transcription factor TF Family: WRKY hypothetical protein RCOM_1621230 [Ricinus communis]
15 Hb_009838_010 0.196397817 - - -
16 Hb_087596_010 0.1976537823 - - PREDICTED: disease resistance protein RPS4-like [Jatropha curcas]
17 Hb_003929_130 0.197707555 - - PREDICTED: uncharacterized protein LOC105643628 [Jatropha curcas]
18 Hb_000243_140 0.1998775389 transcription factor TF Family: SRS Lateral root primordium protein-related, putative [Theobroma cacao]
19 Hb_021888_050 0.2001022318 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
20 Hb_001338_040 0.2017094734 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_015690_020 Hb_015690_020 Hb_000419_060 Hb_000419_060 Hb_015690_020--Hb_000419_060 Hb_001969_090 Hb_001969_090 Hb_015690_020--Hb_001969_090 Hb_003442_070 Hb_003442_070 Hb_015690_020--Hb_003442_070 Hb_002835_180 Hb_002835_180 Hb_015690_020--Hb_002835_180 Hb_000260_290 Hb_000260_290 Hb_015690_020--Hb_000260_290 Hb_003052_220 Hb_003052_220 Hb_015690_020--Hb_003052_220 Hb_000419_060--Hb_001969_090 Hb_001021_130 Hb_001021_130 Hb_000419_060--Hb_001021_130 Hb_010174_060 Hb_010174_060 Hb_000419_060--Hb_010174_060 Hb_012114_040 Hb_012114_040 Hb_000419_060--Hb_012114_040 Hb_000196_080 Hb_000196_080 Hb_000419_060--Hb_000196_080 Hb_004705_120 Hb_004705_120 Hb_000419_060--Hb_004705_120 Hb_007747_200 Hb_007747_200 Hb_001969_090--Hb_007747_200 Hb_000317_280 Hb_000317_280 Hb_001969_090--Hb_000317_280 Hb_000575_150 Hb_000575_150 Hb_001969_090--Hb_000575_150 Hb_003687_240 Hb_003687_240 Hb_001969_090--Hb_003687_240 Hb_010883_090 Hb_010883_090 Hb_001969_090--Hb_010883_090 Hb_000805_020 Hb_000805_020 Hb_001969_090--Hb_000805_020 Hb_007850_080 Hb_007850_080 Hb_003442_070--Hb_007850_080 Hb_005285_030 Hb_005285_030 Hb_003442_070--Hb_005285_030 Hb_001341_100 Hb_001341_100 Hb_003442_070--Hb_001341_100 Hb_001486_030 Hb_001486_030 Hb_003442_070--Hb_001486_030 Hb_165669_010 Hb_165669_010 Hb_003442_070--Hb_165669_010 Hb_008173_110 Hb_008173_110 Hb_003442_070--Hb_008173_110 Hb_065525_090 Hb_065525_090 Hb_002835_180--Hb_065525_090 Hb_002878_020 Hb_002878_020 Hb_002835_180--Hb_002878_020 Hb_034406_030 Hb_034406_030 Hb_002835_180--Hb_034406_030 Hb_012107_060 Hb_012107_060 Hb_002835_180--Hb_012107_060 Hb_011214_020 Hb_011214_020 Hb_002835_180--Hb_011214_020 Hb_000258_260 Hb_000258_260 Hb_002835_180--Hb_000258_260 Hb_000796_250 Hb_000796_250 Hb_000260_290--Hb_000796_250 Hb_001433_180 Hb_001433_180 Hb_000260_290--Hb_001433_180 Hb_001565_110 Hb_001565_110 Hb_000260_290--Hb_001565_110 Hb_000260_290--Hb_003052_220 Hb_031862_040 Hb_031862_040 Hb_000260_290--Hb_031862_040 Hb_001619_080 Hb_001619_080 Hb_003052_220--Hb_001619_080 Hb_003095_040 Hb_003095_040 Hb_003052_220--Hb_003095_040 Hb_002138_010 Hb_002138_010 Hb_003052_220--Hb_002138_010 Hb_005568_080 Hb_005568_080 Hb_003052_220--Hb_005568_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.06127 11.7339 0.73164 0.93445 1.98834 2.28138
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0732 12.3652 10.1494 9.72457 3.54207

CAGE analysis