Hb_015784_010

Information

Type -
Description -
Location Contig15784: 7716-10525
Sequence    

Annotation

kegg
ID pop:POPTR_0228s002002
description hypothetical protein
nr
ID CAN77149.1
description hypothetical protein VITISV_019364 [Vitis vinifera]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A0A0A9CW99
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015784_010 0.0 - - hypothetical protein VITISV_019364 [Vitis vinifera]
2 Hb_000395_160 0.0925037438 - - hypothetical protein POPTR_0006s25490g [Populus trichocarpa]
3 Hb_000004_150 0.1004642029 - - hypothetical protein RCOM_1382630 [Ricinus communis]
4 Hb_000007_170 0.1004642029 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 2-like protein [Nelumbo nucifera]
5 Hb_000010_280 0.1004642029 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
6 Hb_000022_220 0.1004642029 - - PREDICTED: potassium channel KAT3 [Jatropha curcas]
7 Hb_000045_120 0.1004642029 - - hypothetical protein JCGZ_01307 [Jatropha curcas]
8 Hb_000056_320 0.1004642029 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
9 Hb_000066_110 0.1004642029 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01370 [Jatropha curcas]
10 Hb_000072_270 0.1004642029 - - JHL22C18.10 [Jatropha curcas]
11 Hb_000078_110 0.1004642029 - - PREDICTED: uncharacterized protein LOC105640496 [Jatropha curcas]
12 Hb_000081_190 0.1004642029 - - -
13 Hb_000082_030 0.1004642029 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105164525 [Sesamum indicum]
14 Hb_000085_430 0.1004642029 - - -
15 Hb_000092_110 0.1004642029 - - catalytic, putative [Ricinus communis]
16 Hb_000093_120 0.1004642029 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
17 Hb_000120_110 0.1004642029 - - 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase, putative [Ricinus communis]
18 Hb_000125_160 0.1004642029 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_000127_060 0.1004642029 - - -
20 Hb_000128_020 0.1004642029 - - -

Gene co-expression network

sample Hb_015784_010 Hb_015784_010 Hb_000395_160 Hb_000395_160 Hb_015784_010--Hb_000395_160 Hb_000004_150 Hb_000004_150 Hb_015784_010--Hb_000004_150 Hb_000007_170 Hb_000007_170 Hb_015784_010--Hb_000007_170 Hb_000010_280 Hb_000010_280 Hb_015784_010--Hb_000010_280 Hb_000022_220 Hb_000022_220 Hb_015784_010--Hb_000022_220 Hb_000045_120 Hb_000045_120 Hb_015784_010--Hb_000045_120 Hb_000979_270 Hb_000979_270 Hb_000395_160--Hb_000979_270 Hb_005687_020 Hb_005687_020 Hb_000395_160--Hb_005687_020 Hb_000395_160--Hb_000004_150 Hb_000395_160--Hb_000007_170 Hb_000395_160--Hb_000010_280 Hb_000395_160--Hb_000022_220 Hb_000004_150--Hb_000007_170 Hb_000004_150--Hb_000010_280 Hb_000004_150--Hb_000022_220 Hb_000004_150--Hb_000045_120 Hb_000056_320 Hb_000056_320 Hb_000004_150--Hb_000056_320 Hb_000066_110 Hb_000066_110 Hb_000004_150--Hb_000066_110 Hb_000004_150--Hb_000007_170 Hb_000004_150--Hb_000010_280 Hb_000004_150--Hb_000022_220 Hb_000004_150--Hb_000045_120 Hb_000004_150--Hb_000056_320 Hb_000004_150--Hb_000066_110 Hb_000004_150--Hb_000007_170 Hb_000004_150--Hb_000010_280 Hb_000004_150--Hb_000022_220 Hb_000004_150--Hb_000045_120 Hb_000004_150--Hb_000056_320 Hb_000004_150--Hb_000066_110 Hb_000004_150--Hb_000007_170 Hb_000004_150--Hb_000010_280 Hb_000004_150--Hb_000022_220 Hb_000004_150--Hb_000045_120 Hb_000004_150--Hb_000056_320 Hb_000004_150--Hb_000066_110 Hb_000004_150--Hb_000007_170 Hb_000004_150--Hb_000010_280 Hb_000004_150--Hb_000022_220 Hb_000004_150--Hb_000045_120 Hb_000004_150--Hb_000056_320 Hb_000004_150--Hb_000066_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.02333 0 0 0.0413763 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis