Hb_015807_010

Information

Type -
Description -
Location Contig15807: 6702-12594
Sequence    

Annotation

kegg
ID pop:POPTR_0001s44430g
description hypothetical protein
nr
ID XP_006370632.1
description hypothetical protein POPTR_0001s44430g [Populus trichocarpa]
swissprot
ID Q5ZI57
description Trafficking protein particle complex subunit 3 OS=Gallus gallus GN=TRAPPC3 PE=2 SV=1
trembl
ID A9PCZ9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s44430g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13870: 7174-8637
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015807_010 0.0 - - hypothetical protein POPTR_0001s44430g [Populus trichocarpa]
2 Hb_029510_140 0.1118136925 - - PREDICTED: uncharacterized protein LOC105635017 [Jatropha curcas]
3 Hb_001518_040 0.1124104132 - - PREDICTED: G patch domain-containing protein 11 [Populus euphratica]
4 Hb_028900_020 0.1335986697 - - unnamed protein product [Coffea canephora]
5 Hb_009543_030 0.1350411715 - - prefoldin subunit 1 [Jatropha curcas]
6 Hb_000175_070 0.1395024779 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
7 Hb_007632_090 0.1406308751 - - PREDICTED: nicotinamide/nicotinic acid mononucleotide adenylyltransferase isoform X1 [Jatropha curcas]
8 Hb_114343_010 0.143749928 - - PREDICTED: uncharacterized protein LOC105647831 [Jatropha curcas]
9 Hb_022092_090 0.1442292997 - - PREDICTED: uncharacterized protein LOC105646975 [Jatropha curcas]
10 Hb_000840_270 0.1464689405 - - PREDICTED: small RNA degrading nuclease 1 [Jatropha curcas]
11 Hb_007193_100 0.14670928 - - syntaxin family protein [Populus trichocarpa]
12 Hb_002235_150 0.1473156235 - - -
13 Hb_003912_090 0.148250591 - - peptidyl-tRNA hydrolase, putative [Ricinus communis]
14 Hb_000045_070 0.1491068024 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000384_090 0.1497675043 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
16 Hb_060809_010 0.1503335635 - - PREDICTED: uncharacterized protein LOC105163892 [Sesamum indicum]
17 Hb_000317_430 0.1510848222 transcription factor TF Family: SET PREDICTED: ribosomal lysine N-methyltransferase 3 [Jatropha curcas]
18 Hb_000003_090 0.1516739516 - - -
19 Hb_007012_020 0.1522032618 - - hypothetical protein POPTR_0005s11940g [Populus trichocarpa]
20 Hb_003011_040 0.1529532792 - - PREDICTED: uncharacterized protein LOC102629536 isoform X2 [Citrus sinensis]

Gene co-expression network

sample Hb_015807_010 Hb_015807_010 Hb_029510_140 Hb_029510_140 Hb_015807_010--Hb_029510_140 Hb_001518_040 Hb_001518_040 Hb_015807_010--Hb_001518_040 Hb_028900_020 Hb_028900_020 Hb_015807_010--Hb_028900_020 Hb_009543_030 Hb_009543_030 Hb_015807_010--Hb_009543_030 Hb_000175_070 Hb_000175_070 Hb_015807_010--Hb_000175_070 Hb_007632_090 Hb_007632_090 Hb_015807_010--Hb_007632_090 Hb_029510_140--Hb_000175_070 Hb_007193_100 Hb_007193_100 Hb_029510_140--Hb_007193_100 Hb_063134_010 Hb_063134_010 Hb_029510_140--Hb_063134_010 Hb_029510_140--Hb_001518_040 Hb_003005_020 Hb_003005_020 Hb_029510_140--Hb_003005_020 Hb_010436_070 Hb_010436_070 Hb_029510_140--Hb_010436_070 Hb_000384_090 Hb_000384_090 Hb_001518_040--Hb_000384_090 Hb_000617_020 Hb_000617_020 Hb_001518_040--Hb_000617_020 Hb_060809_010 Hb_060809_010 Hb_001518_040--Hb_060809_010 Hb_001518_040--Hb_003005_020 Hb_003097_150 Hb_003097_150 Hb_001518_040--Hb_003097_150 Hb_000077_050 Hb_000077_050 Hb_028900_020--Hb_000077_050 Hb_033642_020 Hb_033642_020 Hb_028900_020--Hb_033642_020 Hb_003434_060 Hb_003434_060 Hb_028900_020--Hb_003434_060 Hb_000012_090 Hb_000012_090 Hb_028900_020--Hb_000012_090 Hb_000307_200 Hb_000307_200 Hb_028900_020--Hb_000307_200 Hb_000176_110 Hb_000176_110 Hb_028900_020--Hb_000176_110 Hb_000103_140 Hb_000103_140 Hb_009543_030--Hb_000103_140 Hb_009543_030--Hb_000175_070 Hb_000510_090 Hb_000510_090 Hb_009543_030--Hb_000510_090 Hb_009543_030--Hb_007193_100 Hb_004453_150 Hb_004453_150 Hb_009543_030--Hb_004453_150 Hb_000684_230 Hb_000684_230 Hb_009543_030--Hb_000684_230 Hb_000175_070--Hb_007193_100 Hb_000317_430 Hb_000317_430 Hb_000175_070--Hb_000317_430 Hb_118419_020 Hb_118419_020 Hb_000175_070--Hb_118419_020 Hb_006788_070 Hb_006788_070 Hb_000175_070--Hb_006788_070 Hb_009558_020 Hb_009558_020 Hb_000175_070--Hb_009558_020 Hb_003125_040 Hb_003125_040 Hb_007632_090--Hb_003125_040 Hb_000997_060 Hb_000997_060 Hb_007632_090--Hb_000997_060 Hb_005389_150 Hb_005389_150 Hb_007632_090--Hb_005389_150 Hb_001009_040 Hb_001009_040 Hb_007632_090--Hb_001009_040 Hb_000617_320 Hb_000617_320 Hb_007632_090--Hb_000617_320 Hb_007441_340 Hb_007441_340 Hb_007632_090--Hb_007441_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.93938 0.16181 0.622017 1.46121 4.76775 6.56276
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.0639 3.96314 1.40672 1.7332 1.30248

CAGE analysis