Hb_015807_020

Information

Type -
Description -
Location Contig15807: 19327-35869
Sequence    

Annotation

kegg
ID rcu:RCOM_0183320
description gibberellin 20-oxidase, putative (EC:1.14.11.23)
nr
ID XP_002522845.1
description gibberellin 20-oxidase, putative [Ricinus communis]
swissprot
ID O49561
description Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX8 PE=1 SV=2
trembl
ID B9SA26
description Gibberellin 20-oxidase, putative OS=Ricinus communis GN=RCOM_0183320 PE=3 SV=1
Gene Ontology
ID GO:0005506
description gibberellin 2-beta-dioxygenase 8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13872: 19328-23110 , PASA_asmbl_13873: 23174-23405 , PASA_asmbl_13874: 27603-34996 , PASA_asmbl_13875: 35175-35748
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015807_020 0.0 - - gibberellin 20-oxidase, putative [Ricinus communis]
2 Hb_001579_050 0.071126814 - - alcohol dehydrogenase, putative [Ricinus communis]
3 Hb_000858_050 0.0747179958 - - kinase, putative [Ricinus communis]
4 Hb_001289_050 0.0811999831 - - hypothetical protein Poptr_cp075 [Populus trichocarpa]
5 Hb_004459_050 0.0943957549 - - conserved hypothetical protein [Ricinus communis]
6 Hb_077151_010 0.0946019595 - - ankyrin repeat protein [Bruguiera gymnorhiza]
7 Hb_000282_100 0.0951781699 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
8 Hb_007101_090 0.1021026481 - - PREDICTED: protein ALTERED XYLOGLUCAN 4 [Jatropha curcas]
9 Hb_054865_040 0.1026883203 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
10 Hb_001856_290 0.1036093931 - - hypothetical protein JCGZ_16255 [Jatropha curcas]
11 Hb_052139_010 0.1041793732 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
12 Hb_001001_130 0.1063719824 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
13 Hb_004807_040 0.1070662955 - - PREDICTED: uncharacterized protein LOC104420559 [Eucalyptus grandis]
14 Hb_168319_040 0.1081910495 - - PREDICTED: cytochrome P450 CYP749A22-like [Jatropha curcas]
15 Hb_001517_060 0.1099485652 - - phosphoribulose kinase, putative [Ricinus communis]
16 Hb_000026_060 0.1107856915 - - beta-1,3-glucanase [Manihot esculenta]
17 Hb_003171_040 0.1145422689 - - multidrug resistance pump, putative [Ricinus communis]
18 Hb_006133_010 0.1158598114 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
19 Hb_009093_020 0.1159360105 - - PREDICTED: uncharacterized protein LOC105642100 [Jatropha curcas]
20 Hb_004146_030 0.1161149893 - - UDP-glucosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_015807_020 Hb_015807_020 Hb_001579_050 Hb_001579_050 Hb_015807_020--Hb_001579_050 Hb_000858_050 Hb_000858_050 Hb_015807_020--Hb_000858_050 Hb_001289_050 Hb_001289_050 Hb_015807_020--Hb_001289_050 Hb_004459_050 Hb_004459_050 Hb_015807_020--Hb_004459_050 Hb_077151_010 Hb_077151_010 Hb_015807_020--Hb_077151_010 Hb_000282_100 Hb_000282_100 Hb_015807_020--Hb_000282_100 Hb_001517_060 Hb_001517_060 Hb_001579_050--Hb_001517_060 Hb_001579_050--Hb_001289_050 Hb_000139_030 Hb_000139_030 Hb_001579_050--Hb_000139_030 Hb_000081_110 Hb_000081_110 Hb_001579_050--Hb_000081_110 Hb_002534_090 Hb_002534_090 Hb_001579_050--Hb_002534_090 Hb_000858_050--Hb_000282_100 Hb_000026_060 Hb_000026_060 Hb_000858_050--Hb_000026_060 Hb_004146_030 Hb_004146_030 Hb_000858_050--Hb_004146_030 Hb_005029_030 Hb_005029_030 Hb_000858_050--Hb_005029_030 Hb_000858_050--Hb_001289_050 Hb_004807_040 Hb_004807_040 Hb_001289_050--Hb_004807_040 Hb_001289_050--Hb_000282_100 Hb_009093_020 Hb_009093_020 Hb_001289_050--Hb_009093_020 Hb_000841_040 Hb_000841_040 Hb_001289_050--Hb_000841_040 Hb_011381_120 Hb_011381_120 Hb_001289_050--Hb_011381_120 Hb_006133_010 Hb_006133_010 Hb_004459_050--Hb_006133_010 Hb_002659_050 Hb_002659_050 Hb_004459_050--Hb_002659_050 Hb_043935_010 Hb_043935_010 Hb_004459_050--Hb_043935_010 Hb_010381_080 Hb_010381_080 Hb_004459_050--Hb_010381_080 Hb_080791_010 Hb_080791_010 Hb_004459_050--Hb_080791_010 Hb_002111_010 Hb_002111_010 Hb_077151_010--Hb_002111_010 Hb_005678_030 Hb_005678_030 Hb_077151_010--Hb_005678_030 Hb_000441_080 Hb_000441_080 Hb_077151_010--Hb_000441_080 Hb_003073_030 Hb_003073_030 Hb_077151_010--Hb_003073_030 Hb_077151_010--Hb_001579_050 Hb_000282_100--Hb_009093_020 Hb_000029_390 Hb_000029_390 Hb_000282_100--Hb_000029_390 Hb_000282_100--Hb_000841_040 Hb_004631_020 Hb_004631_020 Hb_000282_100--Hb_004631_020 Hb_001832_180 Hb_001832_180 Hb_000282_100--Hb_001832_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00834362 0.136281 1.1735 0.703681 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0298121 0 0.33756 6.96009

CAGE analysis