Hb_015807_070

Information

Type -
Description -
Location Contig15807: 72414-80954
Sequence    

Annotation

kegg
ID rcu:RCOM_0182010
description breast carcinoma amplified sequence, putative
nr
ID XP_012070728.1
description PREDICTED: autophagy-related protein 18f [Jatropha curcas]
swissprot
ID Q9FH32
description Autophagy-related protein 18f OS=Arabidopsis thaliana GN=ATG18F PE=2 SV=1
trembl
ID A0A067KS46
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00803 PE=4 SV=1
Gene Ontology
ID GO:0016036
description autophagy-related protein 18f-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13883: 72331-72600 , PASA_asmbl_13884: 72825-72996 , PASA_asmbl_13885: 77115-77545 , PASA_asmbl_13886: 77650-77756 , PASA_asmbl_13887: 77972-78121 , PASA_asmbl_13888: 78122-78292 , PASA_asmbl_13889: 78323-78752
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015807_070 0.0 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
2 Hb_000174_220 0.0540579429 - - cohesin subunit rad21, putative [Ricinus communis]
3 Hb_001021_170 0.0622543641 - - PREDICTED: uncharacterized protein LOC105642474 [Jatropha curcas]
4 Hb_007416_180 0.0658219676 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
5 Hb_004684_010 0.0693297985 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
6 Hb_008500_010 0.0694940618 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Jatropha curcas]
7 Hb_011491_010 0.0699437151 - - Protein YME1, putative [Ricinus communis]
8 Hb_001247_070 0.0731596762 - - PREDICTED: pentatricopeptide repeat-containing protein At1g56690, mitochondrial [Jatropha curcas]
9 Hb_000062_250 0.0737935418 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
10 Hb_000139_090 0.0739207734 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
11 Hb_000890_050 0.0742287758 - - PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]
12 Hb_001213_050 0.0757321744 - - PREDICTED: uncharacterized protein LOC105646665 isoform X1 [Jatropha curcas]
13 Hb_002235_300 0.0762736483 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280 isoform X1 [Jatropha curcas]
14 Hb_045793_010 0.0763373141 - - PREDICTED: putative disease resistance protein RGA3 [Pyrus x bretschneideri]
15 Hb_000035_290 0.0764034589 - - RNA recognition motif-containing family protein [Populus trichocarpa]
16 Hb_001584_150 0.0767437286 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Jatropha curcas]
17 Hb_000291_050 0.0771083421 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
18 Hb_004724_060 0.0777317589 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
19 Hb_001818_070 0.078790493 - - carbon catabolite repressor protein, putative [Ricinus communis]
20 Hb_048219_010 0.0800702384 - - coronatine-insensitive 1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_015807_070 Hb_015807_070 Hb_000174_220 Hb_000174_220 Hb_015807_070--Hb_000174_220 Hb_001021_170 Hb_001021_170 Hb_015807_070--Hb_001021_170 Hb_007416_180 Hb_007416_180 Hb_015807_070--Hb_007416_180 Hb_004684_010 Hb_004684_010 Hb_015807_070--Hb_004684_010 Hb_008500_010 Hb_008500_010 Hb_015807_070--Hb_008500_010 Hb_011491_010 Hb_011491_010 Hb_015807_070--Hb_011491_010 Hb_000139_090 Hb_000139_090 Hb_000174_220--Hb_000139_090 Hb_002235_300 Hb_002235_300 Hb_000174_220--Hb_002235_300 Hb_045793_010 Hb_045793_010 Hb_000174_220--Hb_045793_010 Hb_003785_040 Hb_003785_040 Hb_000174_220--Hb_003785_040 Hb_001247_070 Hb_001247_070 Hb_000174_220--Hb_001247_070 Hb_004355_020 Hb_004355_020 Hb_001021_170--Hb_004355_020 Hb_000768_040 Hb_000768_040 Hb_001021_170--Hb_000768_040 Hb_001021_170--Hb_045793_010 Hb_006847_040 Hb_006847_040 Hb_001021_170--Hb_006847_040 Hb_001021_170--Hb_007416_180 Hb_000538_270 Hb_000538_270 Hb_007416_180--Hb_000538_270 Hb_031527_040 Hb_031527_040 Hb_007416_180--Hb_031527_040 Hb_007416_180--Hb_004684_010 Hb_000181_070 Hb_000181_070 Hb_007416_180--Hb_000181_070 Hb_001248_060 Hb_001248_060 Hb_007416_180--Hb_001248_060 Hb_001409_020 Hb_001409_020 Hb_007416_180--Hb_001409_020 Hb_002311_040 Hb_002311_040 Hb_004684_010--Hb_002311_040 Hb_003464_060 Hb_003464_060 Hb_004684_010--Hb_003464_060 Hb_004684_010--Hb_000768_040 Hb_004724_060 Hb_004724_060 Hb_004684_010--Hb_004724_060 Hb_006316_040 Hb_006316_040 Hb_008500_010--Hb_006316_040 Hb_001584_150 Hb_001584_150 Hb_008500_010--Hb_001584_150 Hb_012656_030 Hb_012656_030 Hb_008500_010--Hb_012656_030 Hb_008500_010--Hb_004724_060 Hb_008500_010--Hb_002311_040 Hb_001005_190 Hb_001005_190 Hb_011491_010--Hb_001005_190 Hb_001828_130 Hb_001828_130 Hb_011491_010--Hb_001828_130 Hb_007163_120 Hb_007163_120 Hb_011491_010--Hb_007163_120 Hb_000243_250 Hb_000243_250 Hb_011491_010--Hb_000243_250 Hb_000092_020 Hb_000092_020 Hb_011491_010--Hb_000092_020 Hb_001818_070 Hb_001818_070 Hb_011491_010--Hb_001818_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.8907 22.3285 7.68421 8.33686 15.967 18.7297
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.0776 11.2784 19.9582 11.474 11.8271

CAGE analysis