Hb_015807_090

Information

Type -
Description -
Location Contig15807: 99861-103052
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa004043mg
description hypothetical protein
nr
ID XP_012070727.1
description PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
swissprot
ID Q9FH36
description Probable galacturonosyltransferase 12 OS=Arabidopsis thaliana GN=GAUT12 PE=2 SV=1
trembl
ID A0A067L3G0
description Hexosyltransferase OS=Jatropha curcas GN=JCGZ_00802 PE=3 SV=1
Gene Ontology
ID GO:0000139
description probable galacturonosyltransferase 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13900: 99852-102876
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015807_090 0.0 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
2 Hb_000086_490 0.0334051407 - - cellulose synthase [Populus tomentosa]
3 Hb_005523_030 0.0400725615 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
4 Hb_003747_160 0.0404128981 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002078_180 0.0459639175 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
6 Hb_001051_060 0.0469620244 - - UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]
7 Hb_005686_040 0.0479952095 - - conserved hypothetical protein [Ricinus communis]
8 Hb_042083_010 0.0501818056 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Jatropha curcas]
9 Hb_009476_080 0.0514320452 - - BnaA03g18920D [Brassica napus]
10 Hb_002835_360 0.0592963994 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
11 Hb_000328_030 0.0597400817 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]
12 Hb_000193_320 0.063525003 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005614_020 0.0687957554 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Jatropha curcas]
14 Hb_000776_090 0.0724154342 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
15 Hb_006065_030 0.0741150594 - - PREDICTED: filament-like plant protein 7 isoform X1 [Jatropha curcas]
16 Hb_002499_030 0.0752948467 - - receptor-kinase, putative [Ricinus communis]
17 Hb_004225_120 0.0754193552 - - PREDICTED: uncharacterized protein LOC105628059 [Jatropha curcas]
18 Hb_012633_020 0.0762784211 - - laccase, putative [Ricinus communis]
19 Hb_001935_060 0.076912667 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
20 Hb_001189_080 0.0784204187 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_015807_090 Hb_015807_090 Hb_000086_490 Hb_000086_490 Hb_015807_090--Hb_000086_490 Hb_005523_030 Hb_005523_030 Hb_015807_090--Hb_005523_030 Hb_003747_160 Hb_003747_160 Hb_015807_090--Hb_003747_160 Hb_002078_180 Hb_002078_180 Hb_015807_090--Hb_002078_180 Hb_001051_060 Hb_001051_060 Hb_015807_090--Hb_001051_060 Hb_005686_040 Hb_005686_040 Hb_015807_090--Hb_005686_040 Hb_000086_490--Hb_005523_030 Hb_000086_490--Hb_005686_040 Hb_000086_490--Hb_001051_060 Hb_000328_030 Hb_000328_030 Hb_000086_490--Hb_000328_030 Hb_000086_490--Hb_002078_180 Hb_005523_030--Hb_001051_060 Hb_005523_030--Hb_005686_040 Hb_000776_090 Hb_000776_090 Hb_005523_030--Hb_000776_090 Hb_005523_030--Hb_002078_180 Hb_003747_160--Hb_001051_060 Hb_011224_070 Hb_011224_070 Hb_003747_160--Hb_011224_070 Hb_003747_160--Hb_005686_040 Hb_009476_080 Hb_009476_080 Hb_003747_160--Hb_009476_080 Hb_004225_120 Hb_004225_120 Hb_003747_160--Hb_004225_120 Hb_002078_180--Hb_005686_040 Hb_002835_360 Hb_002835_360 Hb_002078_180--Hb_002835_360 Hb_002078_180--Hb_009476_080 Hb_001935_060 Hb_001935_060 Hb_002078_180--Hb_001935_060 Hb_001051_060--Hb_005686_040 Hb_001051_060--Hb_002078_180 Hb_005686_040--Hb_002835_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0469579 4.62621 4.49313 66.8222 0.0707259 0.0304126
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0238237 0.0562344 0.0354981 0.514814 40.3869

CAGE analysis