Hb_015807_130

Information

Type -
Description -
Location Contig15807: 111769-118003
Sequence    

Annotation

kegg
ID rcu:RCOM_0181420
description kinesin, putative
nr
ID XP_012070721.1
description PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]
swissprot
ID P46875
description Kinesin-3 OS=Arabidopsis thaliana GN=ATK3 PE=2 SV=1
trembl
ID A0A067L3F5
description Kinesin-like protein OS=Jatropha curcas GN=JCGZ_00797 PE=3 SV=1
Gene Ontology
ID GO:0005871
description kinesin-3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13905: 111663-118132
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015807_130 0.0 - - PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]
2 Hb_001289_070 0.0749811062 - - PREDICTED: protein YLS9-like [Jatropha curcas]
3 Hb_003152_020 0.0810748219 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
4 Hb_002151_070 0.0831603608 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like [Jatropha curcas]
5 Hb_001140_290 0.0849284808 - - hypothetical protein JCGZ_26107 [Jatropha curcas]
6 Hb_001688_050 0.0858153378 - - PREDICTED: reticulon-like protein B9 [Jatropha curcas]
7 Hb_002081_020 0.0868889669 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
8 Hb_005000_150 0.0876379235 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000103_440 0.0878918401 - - hypothetical protein POPTR_0008s15900g [Populus trichocarpa]
10 Hb_004650_110 0.0890427593 - - hypothetical protein POPTR_0002s08760g [Populus trichocarpa]
11 Hb_136408_040 0.0903619346 - - PREDICTED: protein NDR1 [Jatropha curcas]
12 Hb_001699_080 0.0922924106 - - unnamed protein product [Coffea canephora]
13 Hb_002809_180 0.0929826998 - - PREDICTED: homeobox protein HD1 [Jatropha curcas]
14 Hb_010589_010 0.0935595115 - - PREDICTED: classical arabinogalactan protein 9-like [Jatropha curcas]
15 Hb_001397_020 0.0944448608 - - cytochrome P450 family protein [Populus trichocarpa]
16 Hb_000076_240 0.0951644263 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
17 Hb_000017_180 0.0962540191 - - hypothetical protein JCGZ_20551 [Jatropha curcas]
18 Hb_008461_060 0.0989411424 - - hypothetical protein JCGZ_17379 [Jatropha curcas]
19 Hb_001500_130 0.1008914271 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
20 Hb_005183_050 0.1016086784 - - hypothetical protein RCOM_1590900 [Ricinus communis]

Gene co-expression network

sample Hb_015807_130 Hb_015807_130 Hb_001289_070 Hb_001289_070 Hb_015807_130--Hb_001289_070 Hb_003152_020 Hb_003152_020 Hb_015807_130--Hb_003152_020 Hb_002151_070 Hb_002151_070 Hb_015807_130--Hb_002151_070 Hb_001140_290 Hb_001140_290 Hb_015807_130--Hb_001140_290 Hb_001688_050 Hb_001688_050 Hb_015807_130--Hb_001688_050 Hb_002081_020 Hb_002081_020 Hb_015807_130--Hb_002081_020 Hb_005711_030 Hb_005711_030 Hb_001289_070--Hb_005711_030 Hb_005000_150 Hb_005000_150 Hb_001289_070--Hb_005000_150 Hb_001289_070--Hb_003152_020 Hb_000813_070 Hb_000813_070 Hb_001289_070--Hb_000813_070 Hb_001289_070--Hb_002151_070 Hb_001397_020 Hb_001397_020 Hb_003152_020--Hb_001397_020 Hb_007163_110 Hb_007163_110 Hb_003152_020--Hb_007163_110 Hb_136408_040 Hb_136408_040 Hb_003152_020--Hb_136408_040 Hb_010589_010 Hb_010589_010 Hb_003152_020--Hb_010589_010 Hb_002809_180 Hb_002809_180 Hb_003152_020--Hb_002809_180 Hb_003152_020--Hb_005000_150 Hb_002151_070--Hb_001140_290 Hb_002151_070--Hb_005000_150 Hb_000103_440 Hb_000103_440 Hb_002151_070--Hb_000103_440 Hb_002151_070--Hb_000813_070 Hb_002151_070--Hb_005711_030 Hb_001140_290--Hb_005000_150 Hb_138977_010 Hb_138977_010 Hb_001140_290--Hb_138977_010 Hb_001140_290--Hb_002809_180 Hb_001140_290--Hb_000103_440 Hb_001140_290--Hb_010589_010 Hb_001688_050--Hb_000103_440 Hb_001688_050--Hb_001289_070 Hb_003058_240 Hb_003058_240 Hb_001688_050--Hb_003058_240 Hb_001688_050--Hb_000813_070 Hb_004650_110 Hb_004650_110 Hb_001688_050--Hb_004650_110 Hb_008461_060 Hb_008461_060 Hb_002081_020--Hb_008461_060 Hb_001699_080 Hb_001699_080 Hb_002081_020--Hb_001699_080 Hb_002081_020--Hb_001289_070 Hb_001001_070 Hb_001001_070 Hb_002081_020--Hb_001001_070 Hb_002081_020--Hb_001688_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.226029 2.4661 11.5187 45.5263 0.191525 0.341671
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.350461 0.348342 0.110585 1.10118 44.4781

CAGE analysis