Hb_015807_140

Information

Type -
Description -
Location Contig15807: 122234-123398
Sequence    

Annotation

kegg
ID rcu:RCOM_0181200
description small heat-shock protein, putative
nr
ID XP_002522824.1
description small heat-shock protein, putative [Ricinus communis]
swissprot
ID Q9FIT9
description 21.7 kDa class VI heat shock protein OS=Arabidopsis thaliana GN=HSP21.7 PE=2 SV=1
trembl
ID B9SA05
description Small heat-shock protein, putative OS=Ricinus communis GN=RCOM_0181200 PE=3 SV=1
Gene Ontology
ID GO:0009408
description kda class vi heat shock protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13906: 122116-122866
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015807_140 0.0 - - small heat-shock protein, putative [Ricinus communis]
2 Hb_002506_060 0.1228964668 - - PREDICTED: probable transporter mch1 [Populus euphratica]
3 Hb_009787_040 0.1502302265 desease resistance Gene Name: AAA_17 PREDICTED: uncharacterized protein LOC105135462 isoform X2 [Populus euphratica]
4 Hb_002053_060 0.1588748326 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Jatropha curcas]
5 Hb_000099_060 0.1687594672 - - hypothetical protein JCGZ_23948 [Jatropha curcas]
6 Hb_122239_010 0.1706952364 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
7 Hb_138585_060 0.172261252 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
8 Hb_000302_220 0.1724339047 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
9 Hb_001882_070 0.1751125391 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634911 [Jatropha curcas]
10 Hb_002182_060 0.1755042503 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATXR6 [Jatropha curcas]
11 Hb_000836_010 0.1766374343 - - beta-cyanoalanine synthase [Hevea brasiliensis]
12 Hb_144598_020 0.178723686 - - PREDICTED: triphosphate tunel metalloenzyme 3 [Jatropha curcas]
13 Hb_003106_050 0.1795831849 transcription factor TF Family: Orphans hypothetical protein POPTR_0015s08130g [Populus trichocarpa]
14 Hb_164926_020 0.1801208492 - - PREDICTED: uncharacterized protein LOC105645601 [Jatropha curcas]
15 Hb_000450_130 0.1812221292 - - PREDICTED: uncharacterized protein LOC105630216 [Jatropha curcas]
16 Hb_000283_110 0.1821292328 - - PREDICTED: probable prefoldin subunit 4 isoform X2 [Jatropha curcas]
17 Hb_000282_070 0.1823625128 - - PREDICTED: protein REVERSION-TO-ETHYLENE SENSITIVITY1 [Jatropha curcas]
18 Hb_005841_050 0.1825020812 - - PREDICTED: F-box protein SKIP1-like [Jatropha curcas]
19 Hb_000441_190 0.1837435807 - - PREDICTED: GDP-L-galactose phosphorylase 1-like isoform X2 [Vitis vinifera]
20 Hb_001687_040 0.1853272544 - - actin-depolymerizing factor [Hevea brasiliensis]

Gene co-expression network

sample Hb_015807_140 Hb_015807_140 Hb_002506_060 Hb_002506_060 Hb_015807_140--Hb_002506_060 Hb_009787_040 Hb_009787_040 Hb_015807_140--Hb_009787_040 Hb_002053_060 Hb_002053_060 Hb_015807_140--Hb_002053_060 Hb_000099_060 Hb_000099_060 Hb_015807_140--Hb_000099_060 Hb_122239_010 Hb_122239_010 Hb_015807_140--Hb_122239_010 Hb_138585_060 Hb_138585_060 Hb_015807_140--Hb_138585_060 Hb_000450_130 Hb_000450_130 Hb_002506_060--Hb_000450_130 Hb_000816_230 Hb_000816_230 Hb_002506_060--Hb_000816_230 Hb_000230_150 Hb_000230_150 Hb_002506_060--Hb_000230_150 Hb_001882_070 Hb_001882_070 Hb_002506_060--Hb_001882_070 Hb_000836_010 Hb_000836_010 Hb_002506_060--Hb_000836_010 Hb_009787_040--Hb_000099_060 Hb_000970_010 Hb_000970_010 Hb_009787_040--Hb_000970_010 Hb_000563_240 Hb_000563_240 Hb_009787_040--Hb_000563_240 Hb_019253_030 Hb_019253_030 Hb_009787_040--Hb_019253_030 Hb_155764_020 Hb_155764_020 Hb_009787_040--Hb_155764_020 Hb_005590_020 Hb_005590_020 Hb_009787_040--Hb_005590_020 Hb_016604_020 Hb_016604_020 Hb_002053_060--Hb_016604_020 Hb_002759_230 Hb_002759_230 Hb_002053_060--Hb_002759_230 Hb_003106_050 Hb_003106_050 Hb_002053_060--Hb_003106_050 Hb_002053_060--Hb_000099_060 Hb_002909_060 Hb_002909_060 Hb_002053_060--Hb_002909_060 Hb_002182_060 Hb_002182_060 Hb_002053_060--Hb_002182_060 Hb_000134_330 Hb_000134_330 Hb_000099_060--Hb_000134_330 Hb_000099_060--Hb_002182_060 Hb_008173_090 Hb_008173_090 Hb_000099_060--Hb_008173_090 Hb_000099_060--Hb_155764_020 Hb_000099_060--Hb_000970_010 Hb_001269_270 Hb_001269_270 Hb_000099_060--Hb_001269_270 Hb_012251_010 Hb_012251_010 Hb_122239_010--Hb_012251_010 Hb_003893_050 Hb_003893_050 Hb_122239_010--Hb_003893_050 Hb_002716_090 Hb_002716_090 Hb_122239_010--Hb_002716_090 Hb_000029_200 Hb_000029_200 Hb_122239_010--Hb_000029_200 Hb_000699_160 Hb_000699_160 Hb_122239_010--Hb_000699_160 Hb_003641_020 Hb_003641_020 Hb_122239_010--Hb_003641_020 Hb_021409_030 Hb_021409_030 Hb_138585_060--Hb_021409_030 Hb_000072_080 Hb_000072_080 Hb_138585_060--Hb_000072_080 Hb_000258_170 Hb_000258_170 Hb_138585_060--Hb_000258_170 Hb_001141_030 Hb_001141_030 Hb_138585_060--Hb_001141_030 Hb_007100_030 Hb_007100_030 Hb_138585_060--Hb_007100_030 Hb_000479_010 Hb_000479_010 Hb_138585_060--Hb_000479_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.6214 3.77772 1.61694 11.8982 4.17189 6.72384
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.6923 36.5781 17.7146 2.55668 3.28214

CAGE analysis