Hb_015807_150

Information

Type -
Description -
Location Contig15807: 129720-135971
Sequence    

Annotation

kegg
ID rcu:RCOM_0180980
description actin binding protein, putative
nr
ID XP_002522822.1
description actin binding protein, putative [Ricinus communis]
swissprot
ID Q94B77
description Formin-like protein 5 OS=Arabidopsis thaliana GN=FH5 PE=2 SV=2
trembl
ID B9SA03
description Formin-like protein OS=Ricinus communis GN=RCOM_0180980 PE=3 SV=1
Gene Ontology
ID GO:0005618
description formin-like protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13907: 130218-135887 , PASA_asmbl_13908: 132322-133084
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015807_150 0.0 - - actin binding protein, putative [Ricinus communis]
2 Hb_019863_070 0.0617808242 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
3 Hb_008770_030 0.0664432108 - - PREDICTED: MACPF domain-containing protein At4g24290-like [Jatropha curcas]
4 Hb_002818_030 0.0682668526 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
5 Hb_015934_040 0.0722878887 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
6 Hb_000032_520 0.0740630585 - - PREDICTED: F-box protein SKIP8-like [Jatropha curcas]
7 Hb_000297_010 0.076421009 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
8 Hb_000331_670 0.0781791825 - - PREDICTED: protein tipD [Jatropha curcas]
9 Hb_000185_030 0.07827639 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
10 Hb_033772_030 0.0784093022 - - PREDICTED: CST complex subunit CTC1 [Jatropha curcas]
11 Hb_000710_060 0.0785679207 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
12 Hb_000049_260 0.0789779322 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_007765_110 0.0799174731 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
14 Hb_024621_040 0.0817960536 transcription factor TF Family: ERF hypothetical protein L484_014666 [Morus notabilis]
15 Hb_000430_020 0.0819834479 - - -
16 Hb_001205_240 0.083059389 - - PREDICTED: uncharacterized protein LOC105645528 [Jatropha curcas]
17 Hb_000868_090 0.0846787676 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
18 Hb_010128_080 0.0849538754 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Jatropha curcas]
19 Hb_007163_120 0.0850456778 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
20 Hb_001473_160 0.0851562624 - - Vesicle-associated membrane protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_015807_150 Hb_015807_150 Hb_019863_070 Hb_019863_070 Hb_015807_150--Hb_019863_070 Hb_008770_030 Hb_008770_030 Hb_015807_150--Hb_008770_030 Hb_002818_030 Hb_002818_030 Hb_015807_150--Hb_002818_030 Hb_015934_040 Hb_015934_040 Hb_015807_150--Hb_015934_040 Hb_000032_520 Hb_000032_520 Hb_015807_150--Hb_000032_520 Hb_000297_010 Hb_000297_010 Hb_015807_150--Hb_000297_010 Hb_019863_070--Hb_002818_030 Hb_003849_110 Hb_003849_110 Hb_019863_070--Hb_003849_110 Hb_000868_090 Hb_000868_090 Hb_019863_070--Hb_000868_090 Hb_005054_110 Hb_005054_110 Hb_019863_070--Hb_005054_110 Hb_000258_160 Hb_000258_160 Hb_019863_070--Hb_000258_160 Hb_000710_060 Hb_000710_060 Hb_008770_030--Hb_000710_060 Hb_008770_030--Hb_000297_010 Hb_033772_030 Hb_033772_030 Hb_008770_030--Hb_033772_030 Hb_008770_030--Hb_019863_070 Hb_000185_030 Hb_000185_030 Hb_008770_030--Hb_000185_030 Hb_004916_010 Hb_004916_010 Hb_002818_030--Hb_004916_010 Hb_002818_030--Hb_003849_110 Hb_000049_260 Hb_000049_260 Hb_002818_030--Hb_000049_260 Hb_002798_070 Hb_002798_070 Hb_002818_030--Hb_002798_070 Hb_000069_310 Hb_000069_310 Hb_002818_030--Hb_000069_310 Hb_010618_010 Hb_010618_010 Hb_015934_040--Hb_010618_010 Hb_015934_040--Hb_000297_010 Hb_000331_670 Hb_000331_670 Hb_015934_040--Hb_000331_670 Hb_010128_080 Hb_010128_080 Hb_015934_040--Hb_010128_080 Hb_015934_040--Hb_000032_520 Hb_001248_060 Hb_001248_060 Hb_015934_040--Hb_001248_060 Hb_001538_130 Hb_001538_130 Hb_000032_520--Hb_001538_130 Hb_000003_590 Hb_000003_590 Hb_000032_520--Hb_000003_590 Hb_000792_010 Hb_000792_010 Hb_000032_520--Hb_000792_010 Hb_000032_520--Hb_019863_070 Hb_000032_520--Hb_010618_010 Hb_000297_010--Hb_000185_030 Hb_004724_150 Hb_004724_150 Hb_000297_010--Hb_004724_150 Hb_000245_040 Hb_000245_040 Hb_000297_010--Hb_000245_040 Hb_000041_100 Hb_000041_100 Hb_000297_010--Hb_000041_100 Hb_000840_250 Hb_000840_250 Hb_000297_010--Hb_000840_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.47527 13.0723 5.41895 10.8831 8.0783 8.06813
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.13594 11.8705 10.9327 8.46037 6.14437

CAGE analysis