Hb_015884_020

Information

Type -
Description -
Location Contig15884: 32691-58494
Sequence    

Annotation

kegg
ID pop:POPTR_0013s04800g
description POPTRDRAFT_663019; hypothetical protein
nr
ID XP_012089394.1
description PREDICTED: protein PIR [Jatropha curcas]
swissprot
ID Q5S2C3
description Protein PIR OS=Arabidopsis thaliana GN=PIR PE=1 SV=2
trembl
ID A0A067JUV3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23588 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14090: 32793-47621 , PASA_asmbl_14091: 44140-44559 , PASA_asmbl_14092: 47690-48030 , PASA_asmbl_14093: 49541-50435 , PASA_asmbl_14094: 52437-58410 , PASA_asmbl_14095: 52619-58410 , PASA_asmbl_14096: 59252-61816
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015884_020 0.0 - - PREDICTED: protein PIR [Jatropha curcas]
2 Hb_005694_060 0.041817512 - - PREDICTED: bifunctional fucokinase/fucose pyrophosphorylase [Jatropha curcas]
3 Hb_001117_110 0.0673645143 - - PREDICTED: dynamin-2A [Jatropha curcas]
4 Hb_019654_020 0.0674908688 - - PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]
5 Hb_006970_020 0.0675830665 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]
6 Hb_000979_130 0.0687502311 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
7 Hb_002687_200 0.0692507019 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000027_200 0.0756271963 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
9 Hb_000367_180 0.0760371771 - - Heparanase-2, putative [Ricinus communis]
10 Hb_000007_060 0.0775892858 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 1-like isoform X1 [Jatropha curcas]
11 Hb_106890_010 0.0778207307 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
12 Hb_000815_300 0.0782294536 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
13 Hb_002249_080 0.0789389098 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
14 Hb_002552_040 0.0801005692 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
15 Hb_001226_130 0.0805942218 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
16 Hb_116349_120 0.0828190596 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_000862_100 0.0829465295 - - PREDICTED: plastid division protein CDP1, chloroplastic [Jatropha curcas]
18 Hb_000417_390 0.0832529596 - - PREDICTED: ER lumen protein-retaining receptor A [Jatropha curcas]
19 Hb_000418_020 0.0835331178 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
20 Hb_000585_110 0.0835505956 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]

Gene co-expression network

sample Hb_015884_020 Hb_015884_020 Hb_005694_060 Hb_005694_060 Hb_015884_020--Hb_005694_060 Hb_001117_110 Hb_001117_110 Hb_015884_020--Hb_001117_110 Hb_019654_020 Hb_019654_020 Hb_015884_020--Hb_019654_020 Hb_006970_020 Hb_006970_020 Hb_015884_020--Hb_006970_020 Hb_000979_130 Hb_000979_130 Hb_015884_020--Hb_000979_130 Hb_002687_200 Hb_002687_200 Hb_015884_020--Hb_002687_200 Hb_005694_060--Hb_001117_110 Hb_005694_060--Hb_000979_130 Hb_000585_110 Hb_000585_110 Hb_005694_060--Hb_000585_110 Hb_030736_040 Hb_030736_040 Hb_005694_060--Hb_030736_040 Hb_116349_120 Hb_116349_120 Hb_005694_060--Hb_116349_120 Hb_001117_110--Hb_030736_040 Hb_001117_110--Hb_116349_120 Hb_106890_010 Hb_106890_010 Hb_001117_110--Hb_106890_010 Hb_000088_260 Hb_000088_260 Hb_001117_110--Hb_000088_260 Hb_000367_180 Hb_000367_180 Hb_019654_020--Hb_000367_180 Hb_000007_060 Hb_000007_060 Hb_019654_020--Hb_000007_060 Hb_019654_020--Hb_000979_130 Hb_019654_020--Hb_000585_110 Hb_003058_100 Hb_003058_100 Hb_019654_020--Hb_003058_100 Hb_000815_300 Hb_000815_300 Hb_006970_020--Hb_000815_300 Hb_011377_040 Hb_011377_040 Hb_006970_020--Hb_011377_040 Hb_002684_020 Hb_002684_020 Hb_006970_020--Hb_002684_020 Hb_000078_140 Hb_000078_140 Hb_006970_020--Hb_000078_140 Hb_000862_100 Hb_000862_100 Hb_006970_020--Hb_000862_100 Hb_000260_510 Hb_000260_510 Hb_000979_130--Hb_000260_510 Hb_000979_130--Hb_000367_180 Hb_000395_110 Hb_000395_110 Hb_000979_130--Hb_000395_110 Hb_003680_220 Hb_003680_220 Hb_002687_200--Hb_003680_220 Hb_000007_090 Hb_000007_090 Hb_002687_200--Hb_000007_090 Hb_000027_200 Hb_000027_200 Hb_002687_200--Hb_000027_200 Hb_002552_040 Hb_002552_040 Hb_002687_200--Hb_002552_040 Hb_002942_230 Hb_002942_230 Hb_002687_200--Hb_002942_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.0661 7.68461 13.1257 18.1319 5.34763 4.89215
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.55161 3.87348 5.77219 11.9064 17.5763

CAGE analysis