Hb_015934_070

Information

Type -
Description -
Location Contig15934: 35733-42522
Sequence    

Annotation

kegg
ID rcu:RCOM_1643070
description Ribose-phosphate pyrophosphokinase, putative (EC:2.7.6.1)
nr
ID XP_012082646.1
description PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]
swissprot
ID Q9XGA1
description Ribose-phosphate pyrophosphokinase 4 OS=Spinacia oleracea GN=PRS4 PE=2 SV=1
trembl
ID A0A067LEQ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07973 PE=4 SV=1
Gene Ontology
ID GO:0005829
description ribose-phosphate pyrophosphokinase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14153: 35801-42443
cDNA
(Sanger)
(ID:Location)		 024_M14.ab1: 38674-42443

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015934_070 0.0 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]
2 Hb_031862_100 0.0602514621 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_025240_040 0.0603851307 - - hypothetical protein JCGZ_02438 [Jatropha curcas]
4 Hb_127552_030 0.0620132506 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
5 Hb_006907_130 0.0647185393 - - unnamed protein product [Coffea canephora]
6 Hb_007017_030 0.0683103535 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
7 Hb_001369_690 0.0683951541 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
8 Hb_155159_030 0.0689699276 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
9 Hb_000421_220 0.0703993777 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
10 Hb_002183_060 0.0711188758 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
11 Hb_002169_040 0.0733644167 - - unknown [Populus trichocarpa]
12 Hb_000477_060 0.0754212762 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
13 Hb_000985_030 0.0762220828 - - PREDICTED: RRP15-like protein [Populus euphratica]
14 Hb_004920_120 0.0762402148 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002000_080 0.0770080114 - - PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Jatropha curcas]
16 Hb_003633_030 0.0791216619 - - f-actin capping protein alpha, putative [Ricinus communis]
17 Hb_004934_100 0.0796930697 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001009_170 0.0807195684 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
19 Hb_002893_080 0.0812997559 - - PREDICTED: V-type proton ATPase subunit c''1 [Jatropha curcas]
20 Hb_003697_040 0.0813645266 - - hypothetical protein B456_005G209600 [Gossypium raimondii]

Gene co-expression network

sample Hb_015934_070 Hb_015934_070 Hb_031862_100 Hb_031862_100 Hb_015934_070--Hb_031862_100 Hb_025240_040 Hb_025240_040 Hb_015934_070--Hb_025240_040 Hb_127552_030 Hb_127552_030 Hb_015934_070--Hb_127552_030 Hb_006907_130 Hb_006907_130 Hb_015934_070--Hb_006907_130 Hb_007017_030 Hb_007017_030 Hb_015934_070--Hb_007017_030 Hb_001369_690 Hb_001369_690 Hb_015934_070--Hb_001369_690 Hb_001386_040 Hb_001386_040 Hb_031862_100--Hb_001386_040 Hb_001314_050 Hb_001314_050 Hb_031862_100--Hb_001314_050 Hb_001189_070 Hb_001189_070 Hb_031862_100--Hb_001189_070 Hb_031862_100--Hb_006907_130 Hb_005914_170 Hb_005914_170 Hb_031862_100--Hb_005914_170 Hb_004218_110 Hb_004218_110 Hb_025240_040--Hb_004218_110 Hb_004254_120 Hb_004254_120 Hb_025240_040--Hb_004254_120 Hb_025240_040--Hb_127552_030 Hb_002759_060 Hb_002759_060 Hb_025240_040--Hb_002759_060 Hb_000421_220 Hb_000421_220 Hb_025240_040--Hb_000421_220 Hb_155159_030 Hb_155159_030 Hb_127552_030--Hb_155159_030 Hb_000976_170 Hb_000976_170 Hb_127552_030--Hb_000976_170 Hb_105123_010 Hb_105123_010 Hb_127552_030--Hb_105123_010 Hb_108350_010 Hb_108350_010 Hb_127552_030--Hb_108350_010 Hb_002000_080 Hb_002000_080 Hb_006907_130--Hb_002000_080 Hb_006907_130--Hb_001386_040 Hb_002111_040 Hb_002111_040 Hb_006907_130--Hb_002111_040 Hb_001545_080 Hb_001545_080 Hb_006907_130--Hb_001545_080 Hb_002893_080 Hb_002893_080 Hb_007017_030--Hb_002893_080 Hb_001279_150 Hb_001279_150 Hb_007017_030--Hb_001279_150 Hb_008406_190 Hb_008406_190 Hb_007017_030--Hb_008406_190 Hb_001828_190 Hb_001828_190 Hb_007017_030--Hb_001828_190 Hb_003633_030 Hb_003633_030 Hb_007017_030--Hb_003633_030 Hb_001369_690--Hb_004218_110 Hb_003125_010 Hb_003125_010 Hb_001369_690--Hb_003125_010 Hb_000331_450 Hb_000331_450 Hb_001369_690--Hb_000331_450 Hb_012053_070 Hb_012053_070 Hb_001369_690--Hb_012053_070 Hb_001369_690--Hb_025240_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.7566 8.15454 13.716 20.8089 18.7895 26.5172
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.9782 32.5567 28.195 27.697 21.4887

CAGE analysis