Hb_015934_120

Information

Type -
Description -
Location Contig15934: 77718-102533
Sequence    

Annotation

kegg
ID pda:103708176
description callose synthase 7-like
nr
ID XP_010657120.1
description PREDICTED: callose synthase 7 [Vitis vinifera]
swissprot
ID Q9LYS6
description Putative callose synthase 6 OS=Arabidopsis thaliana GN=CALS6 PE=3 SV=2
trembl
ID W1NHC8
description Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00011p00100920 PE=4 SV=1
Gene Ontology
ID GO:0000148
description glucan synthase-like 11 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14159: 77822-82560 , PASA_asmbl_14160: 83899-84736 , PASA_asmbl_14161: 88717-91920 , PASA_asmbl_14162: 91965-92238 , PASA_asmbl_14163: 92390-102569
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015934_120 0.0 - - PREDICTED: callose synthase 7 [Vitis vinifera]
2 Hb_006683_070 0.0746462704 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
3 Hb_001314_080 0.0827040379 - - hypothetical protein POPTR_0018s14330g [Populus trichocarpa]
4 Hb_185255_010 0.0846936291 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
5 Hb_005144_050 0.0903063328 - - PREDICTED: S-adenosylmethionine synthase 1 isoform X2 [Vitis vinifera]
6 Hb_005800_030 0.0924038458 - - PREDICTED: lysM and putative peptidoglycan-binding domain-containing protein 4-like [Jatropha curcas]
7 Hb_000172_440 0.0931577723 - - PREDICTED: NADPH-dependent 1-acyldihydroxyacetone phosphate reductase [Jatropha curcas]
8 Hb_000684_210 0.0957632457 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
9 Hb_001226_140 0.100286239 - - PREDICTED: protein phosphatase 2C 77-like [Jatropha curcas]
10 Hb_113818_010 0.1004853016 - - Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis]
11 Hb_001366_180 0.1017695109 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
12 Hb_009780_030 0.1034394983 transcription factor TF Family: GRAS hypothetical protein POPTR_0005s14540g [Populus trichocarpa]
13 Hb_001269_190 0.104039849 - - PREDICTED: Golgi SNAP receptor complex member 1-1 [Jatropha curcas]
14 Hb_133702_010 0.1052217268 - - PREDICTED: reticulon-4-interacting protein 1, mitochondrial isoform X1 [Jatropha curcas]
15 Hb_001369_750 0.1053037322 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
16 Hb_000023_260 0.1055815594 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
17 Hb_000240_030 0.106393055 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000327_110 0.1081766435 - - hypothetical protein JCGZ_06657 [Jatropha curcas]
19 Hb_002289_060 0.1108476071 - - conserved hypothetical protein [Ricinus communis]
20 Hb_025098_010 0.1113754752 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_015934_120 Hb_015934_120 Hb_006683_070 Hb_006683_070 Hb_015934_120--Hb_006683_070 Hb_001314_080 Hb_001314_080 Hb_015934_120--Hb_001314_080 Hb_185255_010 Hb_185255_010 Hb_015934_120--Hb_185255_010 Hb_005144_050 Hb_005144_050 Hb_015934_120--Hb_005144_050 Hb_005800_030 Hb_005800_030 Hb_015934_120--Hb_005800_030 Hb_000172_440 Hb_000172_440 Hb_015934_120--Hb_000172_440 Hb_006683_070--Hb_185255_010 Hb_000297_120 Hb_000297_120 Hb_006683_070--Hb_000297_120 Hb_001269_190 Hb_001269_190 Hb_006683_070--Hb_001269_190 Hb_025098_010 Hb_025098_010 Hb_006683_070--Hb_025098_010 Hb_006683_070--Hb_005800_030 Hb_010883_040 Hb_010883_040 Hb_001314_080--Hb_010883_040 Hb_000023_260 Hb_000023_260 Hb_001314_080--Hb_000023_260 Hb_001504_030 Hb_001504_030 Hb_001314_080--Hb_001504_030 Hb_000212_230 Hb_000212_230 Hb_001314_080--Hb_000212_230 Hb_000665_130 Hb_000665_130 Hb_001314_080--Hb_000665_130 Hb_185255_010--Hb_025098_010 Hb_185255_010--Hb_005144_050 Hb_185255_010--Hb_001269_190 Hb_001489_110 Hb_001489_110 Hb_185255_010--Hb_001489_110 Hb_001307_030 Hb_001307_030 Hb_185255_010--Hb_001307_030 Hb_001366_180 Hb_001366_180 Hb_005144_050--Hb_001366_180 Hb_005144_050--Hb_025098_010 Hb_002289_080 Hb_002289_080 Hb_005144_050--Hb_002289_080 Hb_000289_110 Hb_000289_110 Hb_005144_050--Hb_000289_110 Hb_024128_020 Hb_024128_020 Hb_005144_050--Hb_024128_020 Hb_133702_010 Hb_133702_010 Hb_005800_030--Hb_133702_010 Hb_004545_110 Hb_004545_110 Hb_005800_030--Hb_004545_110 Hb_002820_020 Hb_002820_020 Hb_005800_030--Hb_002820_020 Hb_003878_150 Hb_003878_150 Hb_005800_030--Hb_003878_150 Hb_004452_120 Hb_004452_120 Hb_005800_030--Hb_004452_120 Hb_000061_180 Hb_000061_180 Hb_005800_030--Hb_000061_180 Hb_007477_050 Hb_007477_050 Hb_000172_440--Hb_007477_050 Hb_000172_440--Hb_006683_070 Hb_000327_110 Hb_000327_110 Hb_000172_440--Hb_000327_110 Hb_000172_440--Hb_005800_030 Hb_009661_030 Hb_009661_030 Hb_000172_440--Hb_009661_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.13125 2.03343 2.24656 5.65627 1.67246 2.75565
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.8169 3.47011 2.86816 1.96819 6.4925

CAGE analysis