Hb_015941_020

Information

Type -
Description -
Location Contig15941: 10258-13626
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14165: 10302-13469
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015941_020 0.0 - - -
2 Hb_001671_010 0.0706400662 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
3 Hb_001049_110 0.0752265999 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
4 Hb_010883_040 0.0797535036 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1 [Jatropha curcas]
5 Hb_005686_090 0.0918672843 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
6 Hb_018133_090 0.093816224 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000883_060 0.0940902337 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3-like [Jatropha curcas]
8 Hb_103118_010 0.0962455731 - - PREDICTED: uncharacterized protein LOC105643231 [Jatropha curcas]
9 Hb_001369_750 0.0963104448 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
10 Hb_000631_080 0.0972380594 transcription factor TF Family: C2H2 PREDICTED: dnaJ homolog subfamily C member 21 [Jatropha curcas]
11 Hb_000061_210 0.0987434658 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
12 Hb_001341_070 0.0998742143 - - PREDICTED: uncharacterized protein LOC105628138 isoform X1 [Jatropha curcas]
13 Hb_005116_050 0.1002755155 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02820, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_000335_030 0.1010984517 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17033 [Jatropha curcas]
15 Hb_000861_020 0.1014012592 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
16 Hb_005253_030 0.1025136181 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_029510_050 0.1030663353 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
18 Hb_003020_220 0.1034995794 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
19 Hb_002811_130 0.1035750141 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
20 Hb_003153_010 0.1061066097 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_015941_020 Hb_015941_020 Hb_001671_010 Hb_001671_010 Hb_015941_020--Hb_001671_010 Hb_001049_110 Hb_001049_110 Hb_015941_020--Hb_001049_110 Hb_010883_040 Hb_010883_040 Hb_015941_020--Hb_010883_040 Hb_005686_090 Hb_005686_090 Hb_015941_020--Hb_005686_090 Hb_018133_090 Hb_018133_090 Hb_015941_020--Hb_018133_090 Hb_000883_060 Hb_000883_060 Hb_015941_020--Hb_000883_060 Hb_004225_050 Hb_004225_050 Hb_001671_010--Hb_004225_050 Hb_008221_180 Hb_008221_180 Hb_001671_010--Hb_008221_180 Hb_005496_130 Hb_005496_130 Hb_001671_010--Hb_005496_130 Hb_002725_120 Hb_002725_120 Hb_001671_010--Hb_002725_120 Hb_001671_010--Hb_005686_090 Hb_000061_210 Hb_000061_210 Hb_001049_110--Hb_000061_210 Hb_001049_110--Hb_005686_090 Hb_001049_110--Hb_018133_090 Hb_000295_080 Hb_000295_080 Hb_001049_110--Hb_000295_080 Hb_000556_090 Hb_000556_090 Hb_001049_110--Hb_000556_090 Hb_001314_080 Hb_001314_080 Hb_010883_040--Hb_001314_080 Hb_002496_020 Hb_002496_020 Hb_010883_040--Hb_002496_020 Hb_000335_030 Hb_000335_030 Hb_010883_040--Hb_000335_030 Hb_001369_750 Hb_001369_750 Hb_010883_040--Hb_001369_750 Hb_002276_020 Hb_002276_020 Hb_010883_040--Hb_002276_020 Hb_005736_020 Hb_005736_020 Hb_005686_090--Hb_005736_020 Hb_001304_110 Hb_001304_110 Hb_005686_090--Hb_001304_110 Hb_002518_260 Hb_002518_260 Hb_005686_090--Hb_002518_260 Hb_029510_050 Hb_029510_050 Hb_005686_090--Hb_029510_050 Hb_001008_120 Hb_001008_120 Hb_005686_090--Hb_001008_120 Hb_028912_050 Hb_028912_050 Hb_005686_090--Hb_028912_050 Hb_000337_050 Hb_000337_050 Hb_018133_090--Hb_000337_050 Hb_011716_130 Hb_011716_130 Hb_018133_090--Hb_011716_130 Hb_002811_130 Hb_002811_130 Hb_018133_090--Hb_002811_130 Hb_103118_010 Hb_103118_010 Hb_018133_090--Hb_103118_010 Hb_000010_340 Hb_000010_340 Hb_000883_060--Hb_000010_340 Hb_001341_070 Hb_001341_070 Hb_000883_060--Hb_001341_070 Hb_000883_060--Hb_001671_010 Hb_006711_100 Hb_006711_100 Hb_000883_060--Hb_006711_100 Hb_000913_020 Hb_000913_020 Hb_000883_060--Hb_000913_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5913 9.31806 8.95266 10.0397 12.0619 13.91
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.1974 16.6065 19.1753 7.83276 27.0898

CAGE analysis