Hb_015941_030

Information

Type -
Description -
Location Contig15941: 24673-28819
Sequence    

Annotation

kegg
ID rcu:RCOM_1108000
description hypothetical protein
nr
ID ABK94010.1
description unknown [Populus trichocarpa]
swissprot
ID Q5CZL1
description Ganglioside-induced differentiation-associated protein 2 OS=Xenopus tropicalis PE=2 SV=1
trembl
ID A9PCA7
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14168: 24677-28740
cDNA
(Sanger)
(ID:Location)		 007_K06.ab1: 24677-28388 , 014_I14.ab1: 24677-28390

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015941_030 0.0 - - unknown [Populus trichocarpa]
2 Hb_029584_080 0.0634580604 - - serine acetyltransferase [Hevea brasiliensis]
3 Hb_000808_040 0.0680239399 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
4 Hb_002232_170 0.0753009861 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
5 Hb_000116_110 0.0776881825 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
6 Hb_008406_160 0.0780868994 - - PREDICTED: ADP,ATP carrier protein 3, mitochondrial [Jatropha curcas]
7 Hb_002475_160 0.0793216168 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
8 Hb_001811_150 0.0806809297 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like isoform X2 [Jatropha curcas]
9 Hb_000997_060 0.0814391138 - - PREDICTED: DNA repair protein XRCC4 [Jatropha curcas]
10 Hb_000703_080 0.0832625372 - - guanine nucleotide exchange factor P532, putative [Ricinus communis]
11 Hb_000236_370 0.0862870424 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
12 Hb_000645_150 0.0883341317 - - zinc finger protein, putative [Ricinus communis]
13 Hb_000012_090 0.088965572 - - 3'-5' exonuclease, putative [Ricinus communis]
14 Hb_010710_110 0.0895962679 - - PREDICTED: uncharacterized protein LOC103997323 [Musa acuminata subsp. malaccensis]
15 Hb_008725_250 0.0899990018 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
16 Hb_000258_410 0.0914584571 - - PREDICTED: uncharacterized protein LOC105630409 [Jatropha curcas]
17 Hb_000009_550 0.0915622624 - - hypothetical protein RCOM_0603640 [Ricinus communis]
18 Hb_001655_070 0.0920577918 - - PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
19 Hb_030312_040 0.0924955176 - - hypothetical protein JCGZ_04876 [Jatropha curcas]
20 Hb_012305_070 0.0932564672 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_015941_030 Hb_015941_030 Hb_029584_080 Hb_029584_080 Hb_015941_030--Hb_029584_080 Hb_000808_040 Hb_000808_040 Hb_015941_030--Hb_000808_040 Hb_002232_170 Hb_002232_170 Hb_015941_030--Hb_002232_170 Hb_000116_110 Hb_000116_110 Hb_015941_030--Hb_000116_110 Hb_008406_160 Hb_008406_160 Hb_015941_030--Hb_008406_160 Hb_002475_160 Hb_002475_160 Hb_015941_030--Hb_002475_160 Hb_000009_550 Hb_000009_550 Hb_029584_080--Hb_000009_550 Hb_029584_080--Hb_000808_040 Hb_029584_080--Hb_002232_170 Hb_000008_330 Hb_000008_330 Hb_029584_080--Hb_000008_330 Hb_086639_070 Hb_086639_070 Hb_029584_080--Hb_086639_070 Hb_070739_010 Hb_070739_010 Hb_000808_040--Hb_070739_010 Hb_000808_040--Hb_086639_070 Hb_000808_040--Hb_008406_160 Hb_000465_430 Hb_000465_430 Hb_000808_040--Hb_000465_430 Hb_003994_180 Hb_003994_180 Hb_000808_040--Hb_003994_180 Hb_007101_100 Hb_007101_100 Hb_002232_170--Hb_007101_100 Hb_000997_060 Hb_000997_060 Hb_002232_170--Hb_000997_060 Hb_000169_010 Hb_000169_010 Hb_002232_170--Hb_000169_010 Hb_002374_160 Hb_002374_160 Hb_002232_170--Hb_002374_160 Hb_002232_170--Hb_000808_040 Hb_007643_050 Hb_007643_050 Hb_000116_110--Hb_007643_050 Hb_012305_070 Hb_012305_070 Hb_000116_110--Hb_012305_070 Hb_000116_110--Hb_002475_160 Hb_000236_370 Hb_000236_370 Hb_000116_110--Hb_000236_370 Hb_000265_150 Hb_000265_150 Hb_000116_110--Hb_000265_150 Hb_000258_410 Hb_000258_410 Hb_008406_160--Hb_000258_410 Hb_008406_160--Hb_000997_060 Hb_003453_020 Hb_003453_020 Hb_008406_160--Hb_003453_020 Hb_000322_050 Hb_000322_050 Hb_008406_160--Hb_000322_050 Hb_007336_020 Hb_007336_020 Hb_002475_160--Hb_007336_020 Hb_002475_160--Hb_007643_050 Hb_007590_080 Hb_007590_080 Hb_002475_160--Hb_007590_080 Hb_001158_220 Hb_001158_220 Hb_002475_160--Hb_001158_220 Hb_000645_150 Hb_000645_150 Hb_002475_160--Hb_000645_150 Hb_011942_080 Hb_011942_080 Hb_002475_160--Hb_011942_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
175.086 110.601 31.2957 60.4136 205.266 235.717
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
217.217 136.375 94.3195 56.5129 31.7359

CAGE analysis