Hb_015967_030

Information

Type transcription factor
Description TF Family: B3
Location Contig15967: 47902-59574
Sequence    

Annotation

kegg
ID rcu:RCOM_1163180
description transcription factor, putative
nr
ID XP_012078073.1
description PREDICTED: B3 domain-containing transcription repressor VAL1 isoform X1 [Jatropha curcas]
swissprot
ID Q5CCK4
description B3 domain-containing transcription repressor VAL2 OS=Arabidopsis thaliana GN=VAL2 PE=2 SV=1
trembl
ID A0A067LB89
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17313 PE=4 SV=1
Gene Ontology
ID GO:0003677
description b3 domain-containing transcription repressor val1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14203: 47845-59706 , PASA_asmbl_14204: 47845-53109
cDNA
(Sanger)
(ID:Location)		 008_C11.ab1: 54166-59706

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015967_030 0.0 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription repressor VAL1 isoform X1 [Jatropha curcas]
2 Hb_007558_090 0.0977581501 - - PREDICTED: serine/threonine-protein kinase STN8, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_000235_070 0.1075535113 - - PREDICTED: VIN3-like protein 2 [Jatropha curcas]
4 Hb_000116_250 0.1102411054 - - PREDICTED: DNA mismatch repair protein MLH3 [Jatropha curcas]
5 Hb_000926_080 0.114561437 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
6 Hb_027506_040 0.1151829002 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
7 Hb_049575_010 0.1167716062 - - hypothetical protein POPTR_0001s15330g [Populus trichocarpa]
8 Hb_005000_080 0.1187404177 - - PREDICTED: thioredoxin-like 2, chloroplastic [Populus euphratica]
9 Hb_005332_080 0.1190412045 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Jatropha curcas]
10 Hb_007217_010 0.1197314305 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
11 Hb_000676_020 0.12092113 - - PREDICTED: uncharacterized protein LOC105645386 [Jatropha curcas]
12 Hb_011476_030 0.1235130004 - - PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]
13 Hb_001269_620 0.1241960514 - - PREDICTED: magnesium transporter MRS2-1 isoform X1 [Populus euphratica]
14 Hb_002986_090 0.1261991456 - - PREDICTED: methionine aminopeptidase 1D, chloroplastic/mitochondrial [Jatropha curcas]
15 Hb_001390_100 0.1275672592 - - PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic [Jatropha curcas]
16 Hb_006907_060 0.1276087816 - - Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]
17 Hb_000820_140 0.1280589137 - - histone H4 [Zea mays]
18 Hb_001438_010 0.128682505 - - PREDICTED: uncharacterized protein LOC105639111 isoform X1 [Jatropha curcas]
19 Hb_003462_180 0.128999635 transcription factor TF Family: GNAT PREDICTED: probable acetyltransferase NATA1-like [Jatropha curcas]
20 Hb_001711_120 0.1294029894 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_015967_030 Hb_015967_030 Hb_007558_090 Hb_007558_090 Hb_015967_030--Hb_007558_090 Hb_000235_070 Hb_000235_070 Hb_015967_030--Hb_000235_070 Hb_000116_250 Hb_000116_250 Hb_015967_030--Hb_000116_250 Hb_000926_080 Hb_000926_080 Hb_015967_030--Hb_000926_080 Hb_027506_040 Hb_027506_040 Hb_015967_030--Hb_027506_040 Hb_049575_010 Hb_049575_010 Hb_015967_030--Hb_049575_010 Hb_029622_120 Hb_029622_120 Hb_007558_090--Hb_029622_120 Hb_001900_140 Hb_001900_140 Hb_007558_090--Hb_001900_140 Hb_005946_040 Hb_005946_040 Hb_007558_090--Hb_005946_040 Hb_000537_100 Hb_000537_100 Hb_007558_090--Hb_000537_100 Hb_007558_090--Hb_049575_010 Hb_007558_090--Hb_000926_080 Hb_001269_620 Hb_001269_620 Hb_000235_070--Hb_001269_620 Hb_061256_010 Hb_061256_010 Hb_000235_070--Hb_061256_010 Hb_005000_080 Hb_005000_080 Hb_000235_070--Hb_005000_080 Hb_000235_070--Hb_027506_040 Hb_000088_260 Hb_000088_260 Hb_000235_070--Hb_000088_260 Hb_138585_030 Hb_138585_030 Hb_000116_250--Hb_138585_030 Hb_001390_100 Hb_001390_100 Hb_000116_250--Hb_001390_100 Hb_000585_110 Hb_000585_110 Hb_000116_250--Hb_000585_110 Hb_003355_010 Hb_003355_010 Hb_000116_250--Hb_003355_010 Hb_003440_020 Hb_003440_020 Hb_000116_250--Hb_003440_020 Hb_000007_090 Hb_000007_090 Hb_000116_250--Hb_000007_090 Hb_000200_300 Hb_000200_300 Hb_000926_080--Hb_000200_300 Hb_003266_030 Hb_003266_030 Hb_000926_080--Hb_003266_030 Hb_000086_080 Hb_000086_080 Hb_000926_080--Hb_000086_080 Hb_004965_110 Hb_004965_110 Hb_000926_080--Hb_004965_110 Hb_006907_060 Hb_006907_060 Hb_000926_080--Hb_006907_060 Hb_000926_080--Hb_027506_040 Hb_027506_040--Hb_000200_300 Hb_011671_260 Hb_011671_260 Hb_027506_040--Hb_011671_260 Hb_000398_170 Hb_000398_170 Hb_027506_040--Hb_000398_170 Hb_003602_060 Hb_003602_060 Hb_027506_040--Hb_003602_060 Hb_000684_030 Hb_000684_030 Hb_027506_040--Hb_000684_030 Hb_073973_090 Hb_073973_090 Hb_049575_010--Hb_073973_090 Hb_000330_090 Hb_000330_090 Hb_049575_010--Hb_000330_090 Hb_007904_230 Hb_007904_230 Hb_049575_010--Hb_007904_230 Hb_049575_010--Hb_001269_620 Hb_000364_050 Hb_000364_050 Hb_049575_010--Hb_000364_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.17325 1.66447 6.73937 2.47611 0.724595 0.675518
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.957415 2.77819 2.31831 1.85862 5.27168

CAGE analysis