Hb_015978_010

Information

Type -
Description -
Location Contig15978: 3967-7185
Sequence    

Annotation

kegg
ID rcu:RCOM_1347430
description Beta-glucosidase, putative (EC:3.2.1.21)
nr
ID XP_011041424.1
description PREDICTED: probable beta-D-xylosidase 2 [Populus euphratica]
swissprot
ID Q94KD8
description Probable beta-D-xylosidase 2 OS=Arabidopsis thaliana GN=BXL2 PE=2 SV=1
trembl
ID B9RNG1
description Beta-glucosidase, putative OS=Ricinus communis GN=RCOM_1347430 PE=4 SV=1
Gene Ontology
ID GO:0009505
description probable beta-d-xylosidase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015978_010 0.0 - - PREDICTED: probable beta-D-xylosidase 2 [Populus euphratica]
2 Hb_003913_060 0.096370443 - - ATP binding protein, putative [Ricinus communis]
3 Hb_003398_090 0.1058160149 - - PREDICTED: expansin-A4 [Jatropha curcas]
4 Hb_000163_010 0.1191216831 - - hypothetical protein JCGZ_13952 [Jatropha curcas]
5 Hb_000751_060 0.1194231745 - - PREDICTED: extensin-2-like, partial [Sesamum indicum]
6 Hb_011849_020 0.1331832448 - - dioxygenase family protein [Populus trichocarpa]
7 Hb_010334_050 0.1416611982 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000645_250 0.142048924 - - PREDICTED: putative beta-D-xylosidase [Jatropha curcas]
9 Hb_168319_060 0.1445025525 - - PREDICTED: cytochrome P450 CYP749A22-like [Populus euphratica]
10 Hb_000373_060 0.1464960617 - - PREDICTED: extensin-3 [Camelina sativa]
11 Hb_000609_020 0.1477179685 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
12 Hb_029510_090 0.1489070987 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
13 Hb_000000_200 0.1491576129 - - PREDICTED: protein TRANSPARENT TESTA 12 [Jatropha curcas]
14 Hb_000139_500 0.1500046323 - - PREDICTED: putative uncharacterized protein DDB_G0286901 [Prunus mume]
15 Hb_000318_060 0.1521663307 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000836_480 0.1535577394 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
17 Hb_003861_090 0.1552687217 - - adenylsulfate kinase, putative [Ricinus communis]
18 Hb_006501_100 0.1579230161 - - malic enzyme, putative [Ricinus communis]
19 Hb_000254_060 0.1592521627 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007875_020 0.1623606803 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]

Gene co-expression network

sample Hb_015978_010 Hb_015978_010 Hb_003913_060 Hb_003913_060 Hb_015978_010--Hb_003913_060 Hb_003398_090 Hb_003398_090 Hb_015978_010--Hb_003398_090 Hb_000163_010 Hb_000163_010 Hb_015978_010--Hb_000163_010 Hb_000751_060 Hb_000751_060 Hb_015978_010--Hb_000751_060 Hb_011849_020 Hb_011849_020 Hb_015978_010--Hb_011849_020 Hb_010334_050 Hb_010334_050 Hb_015978_010--Hb_010334_050 Hb_003913_060--Hb_000163_010 Hb_000318_060 Hb_000318_060 Hb_003913_060--Hb_000318_060 Hb_003913_060--Hb_003398_090 Hb_000139_500 Hb_000139_500 Hb_003913_060--Hb_000139_500 Hb_003913_060--Hb_011849_020 Hb_001430_090 Hb_001430_090 Hb_003398_090--Hb_001430_090 Hb_003398_090--Hb_000139_500 Hb_000393_030 Hb_000393_030 Hb_003398_090--Hb_000393_030 Hb_003398_090--Hb_000163_010 Hb_000163_010--Hb_011849_020 Hb_000163_010--Hb_000318_060 Hb_003177_080 Hb_003177_080 Hb_000163_010--Hb_003177_080 Hb_000645_250 Hb_000645_250 Hb_000751_060--Hb_000645_250 Hb_060152_010 Hb_060152_010 Hb_000751_060--Hb_060152_010 Hb_000751_070 Hb_000751_070 Hb_000751_060--Hb_000751_070 Hb_168319_060 Hb_168319_060 Hb_000751_060--Hb_168319_060 Hb_146930_010 Hb_146930_010 Hb_000751_060--Hb_146930_010 Hb_000847_120 Hb_000847_120 Hb_000751_060--Hb_000847_120 Hb_000254_060 Hb_000254_060 Hb_011849_020--Hb_000254_060 Hb_179138_010 Hb_179138_010 Hb_011849_020--Hb_179138_010 Hb_000009_430 Hb_000009_430 Hb_011849_020--Hb_000009_430 Hb_000000_200 Hb_000000_200 Hb_010334_050--Hb_000000_200 Hb_116190_010 Hb_116190_010 Hb_010334_050--Hb_116190_010 Hb_000609_020 Hb_000609_020 Hb_010334_050--Hb_000609_020 Hb_000373_060 Hb_000373_060 Hb_010334_050--Hb_000373_060 Hb_003861_090 Hb_003861_090 Hb_010334_050--Hb_003861_090 Hb_008376_020 Hb_008376_020 Hb_010334_050--Hb_008376_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.048273 0.175273 0.637489 0.0274534 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.922216 0.415155

CAGE analysis