Hb_015978_020

Information

Type -
Description -
Location Contig15978: 9462-10037
Sequence    

Annotation

kegg
ID tcc:TCM_004788
description Multidrug resistance protein ABC transporter family protein, putative
nr
ID XP_007051081.1
description Multidrug resistance protein ABC transporter family protein, putative [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061DZ20
description Multidrug resistance protein ABC transporter family protein, putative OS=Theobroma cacao GN=TCM_004788 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015978_020 0.0 - - Multidrug resistance protein ABC transporter family protein, putative [Theobroma cacao]
2 Hb_003680_240 0.0938686654 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
3 Hb_003685_070 0.1109934735 - - RecName: Full=(S)-hydroxynitrile lyase; AltName: Full=(S)-acetone-cyanohydrin lyase; AltName: Full=Oxynitrilase [Hevea brasiliensis]
4 Hb_014834_100 0.1121338037 - - PREDICTED: probable aquaporin TIP-type [Gossypium raimondii]
5 Hb_140627_040 0.115155062 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
6 Hb_001433_230 0.1152648871 - - PREDICTED: kinesin-4-like [Jatropha curcas]
7 Hb_005357_170 0.1195289604 - - Pectinesterase precursor, putative [Ricinus communis]
8 Hb_000731_180 0.120114767 - - hypothetical protein POPTR_0004s01820g [Populus trichocarpa]
9 Hb_001357_110 0.1229144374 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
10 Hb_000227_290 0.1236732342 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
11 Hb_000313_080 0.1241187568 rubber biosynthesis Gene Name: CPT3 cis-prenyltransferase 3 [Hevea brasiliensis]
12 Hb_136944_010 0.1245175603 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
13 Hb_011224_030 0.1251568135 - - PREDICTED: oligopeptide transporter 1-like isoform X1 [Jatropha curcas]
14 Hb_177208_010 0.1265595922 transcription factor TF Family: MIKC MADS-box transcription factor, partial [Jatropha sp. CONN 198700232]
15 Hb_001557_030 0.1274909944 - - hypothetical protein CICLE_v10005306mg [Citrus clementina]
16 Hb_000614_300 0.127814183 - - PREDICTED: BAHD acyltransferase At5g47980-like [Jatropha curcas]
17 Hb_002263_050 0.1282774241 - - hypothetical protein POPTR_0016s06160g [Populus trichocarpa]
18 Hb_004732_080 0.1285163281 - - PREDICTED: germin-like protein subfamily 3 member 2 [Populus euphratica]
19 Hb_000331_630 0.1304176911 - - hypothetical protein B456_008G203900 [Gossypium raimondii]
20 Hb_000408_060 0.1313473349 - - hypothetical protein POPTR_0018s11360g [Populus trichocarpa]

Gene co-expression network

sample Hb_015978_020 Hb_015978_020 Hb_003680_240 Hb_003680_240 Hb_015978_020--Hb_003680_240 Hb_003685_070 Hb_003685_070 Hb_015978_020--Hb_003685_070 Hb_014834_100 Hb_014834_100 Hb_015978_020--Hb_014834_100 Hb_140627_040 Hb_140627_040 Hb_015978_020--Hb_140627_040 Hb_001433_230 Hb_001433_230 Hb_015978_020--Hb_001433_230 Hb_005357_170 Hb_005357_170 Hb_015978_020--Hb_005357_170 Hb_002686_220 Hb_002686_220 Hb_003680_240--Hb_002686_220 Hb_003598_050 Hb_003598_050 Hb_003680_240--Hb_003598_050 Hb_006153_140 Hb_006153_140 Hb_003680_240--Hb_006153_140 Hb_000331_630 Hb_000331_630 Hb_003680_240--Hb_000331_630 Hb_003680_240--Hb_140627_040 Hb_017061_010 Hb_017061_010 Hb_003680_240--Hb_017061_010 Hb_001887_010 Hb_001887_010 Hb_003685_070--Hb_001887_010 Hb_150179_010 Hb_150179_010 Hb_003685_070--Hb_150179_010 Hb_011224_030 Hb_011224_030 Hb_003685_070--Hb_011224_030 Hb_007007_140 Hb_007007_140 Hb_003685_070--Hb_007007_140 Hb_003685_070--Hb_005357_170 Hb_024066_020 Hb_024066_020 Hb_003685_070--Hb_024066_020 Hb_001557_030 Hb_001557_030 Hb_014834_100--Hb_001557_030 Hb_103468_010 Hb_103468_010 Hb_014834_100--Hb_103468_010 Hb_014834_100--Hb_011224_030 Hb_014834_100--Hb_001433_230 Hb_014834_100--Hb_150179_010 Hb_002073_210 Hb_002073_210 Hb_014834_100--Hb_002073_210 Hb_034713_010 Hb_034713_010 Hb_140627_040--Hb_034713_010 Hb_009367_070 Hb_009367_070 Hb_140627_040--Hb_009367_070 Hb_051212_020 Hb_051212_020 Hb_140627_040--Hb_051212_020 Hb_000207_060 Hb_000207_060 Hb_140627_040--Hb_000207_060 Hb_009062_020 Hb_009062_020 Hb_140627_040--Hb_009062_020 Hb_022250_140 Hb_022250_140 Hb_001433_230--Hb_022250_140 Hb_006816_060 Hb_006816_060 Hb_001433_230--Hb_006816_060 Hb_001634_050 Hb_001634_050 Hb_001433_230--Hb_001634_050 Hb_001433_230--Hb_005357_170 Hb_005396_020 Hb_005396_020 Hb_001433_230--Hb_005396_020 Hb_003765_010 Hb_003765_010 Hb_005357_170--Hb_003765_010 Hb_005357_170--Hb_001887_010 Hb_055276_010 Hb_055276_010 Hb_005357_170--Hb_055276_010 Hb_005357_170--Hb_011224_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0461648 0.0392381 0.713442 5.16287 0.0867534 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0693775 0.648694

CAGE analysis