Hb_015978_060

Information

Type -
Description -
Location Contig15978: 35264-36215
Sequence    

Annotation

kegg
ID atr:s00003p00042000
description AMTR_s00003p00042000; hypothetical protein
nr
ID CBI39581.3
description unnamed protein product [Vitis vinifera]
swissprot
ID O04834
description GTP-binding protein SAR1A OS=Arabidopsis thaliana GN=SAR1A PE=2 SV=1
trembl
ID W9QX75
description GTP-binding protein OS=Morus notabilis GN=L484_003980 PE=3 SV=1
Gene Ontology
ID GO:0005783
description gtp-binding protein sar1a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14214: 17331-36302
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015978_060 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000661_250 0.0763450005 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
3 Hb_005618_160 0.0808138447 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
4 Hb_001259_090 0.0814588267 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
5 Hb_000154_080 0.0827456951 transcription factor TF Family: bZIP PREDICTED: probable transcription factor PosF21 [Jatropha curcas]
6 Hb_000300_060 0.0833313441 - - PREDICTED: F-box protein SKIP24 [Jatropha curcas]
7 Hb_000808_040 0.0841947594 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
8 Hb_000645_050 0.0863017975 - - peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Populus trichocarpa]
9 Hb_000462_140 0.0869863953 - - PREDICTED: dnaJ homolog subfamily C member 28 [Jatropha curcas]
10 Hb_003010_030 0.0876293688 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
11 Hb_005690_010 0.0913953216 - - PREDICTED: origin recognition complex subunit 2 [Populus euphratica]
12 Hb_005276_210 0.0920031072 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Jatropha curcas]
13 Hb_000613_090 0.0934195949 - - PREDICTED: uncharacterized protein LOC105641542 isoform X1 [Jatropha curcas]
14 Hb_001195_760 0.0948365377 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
15 Hb_000853_170 0.0951073143 - - PREDICTED: programmed cell death protein 2 isoform X3 [Populus euphratica]
16 Hb_007590_050 0.0959729354 - - NudC domain-containing protein, putative [Ricinus communis]
17 Hb_096563_010 0.0961250987 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
18 Hb_070739_010 0.096198931 - - PREDICTED: probable aminotransferase ACS12 isoform X2 [Jatropha curcas]
19 Hb_012340_080 0.0963841024 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
20 Hb_005694_110 0.0965427727 - - hypothetical protein PRUPE_ppa008137mg [Prunus persica]

Gene co-expression network

sample Hb_015978_060 Hb_015978_060 Hb_000661_250 Hb_000661_250 Hb_015978_060--Hb_000661_250 Hb_005618_160 Hb_005618_160 Hb_015978_060--Hb_005618_160 Hb_001259_090 Hb_001259_090 Hb_015978_060--Hb_001259_090 Hb_000154_080 Hb_000154_080 Hb_015978_060--Hb_000154_080 Hb_000300_060 Hb_000300_060 Hb_015978_060--Hb_000300_060 Hb_000808_040 Hb_000808_040 Hb_015978_060--Hb_000808_040 Hb_000661_250--Hb_001259_090 Hb_096563_010 Hb_096563_010 Hb_000661_250--Hb_096563_010 Hb_000462_140 Hb_000462_140 Hb_000661_250--Hb_000462_140 Hb_001635_170 Hb_001635_170 Hb_000661_250--Hb_001635_170 Hb_002007_060 Hb_002007_060 Hb_000661_250--Hb_002007_060 Hb_002233_150 Hb_002233_150 Hb_000661_250--Hb_002233_150 Hb_000174_110 Hb_000174_110 Hb_005618_160--Hb_000174_110 Hb_054865_100 Hb_054865_100 Hb_005618_160--Hb_054865_100 Hb_011970_030 Hb_011970_030 Hb_005618_160--Hb_011970_030 Hb_005618_160--Hb_000462_140 Hb_003010_030 Hb_003010_030 Hb_005618_160--Hb_003010_030 Hb_002495_040 Hb_002495_040 Hb_005618_160--Hb_002495_040 Hb_000866_270 Hb_000866_270 Hb_001259_090--Hb_000866_270 Hb_001259_090--Hb_096563_010 Hb_001259_090--Hb_002007_060 Hb_000059_330 Hb_000059_330 Hb_001259_090--Hb_000059_330 Hb_000656_400 Hb_000656_400 Hb_001259_090--Hb_000656_400 Hb_003878_190 Hb_003878_190 Hb_000154_080--Hb_003878_190 Hb_003551_020 Hb_003551_020 Hb_000154_080--Hb_003551_020 Hb_002685_190 Hb_002685_190 Hb_000154_080--Hb_002685_190 Hb_000007_100 Hb_000007_100 Hb_000154_080--Hb_000007_100 Hb_001221_410 Hb_001221_410 Hb_000154_080--Hb_001221_410 Hb_066182_010 Hb_066182_010 Hb_000300_060--Hb_066182_010 Hb_005276_210 Hb_005276_210 Hb_000300_060--Hb_005276_210 Hb_003097_150 Hb_003097_150 Hb_000300_060--Hb_003097_150 Hb_001571_040 Hb_001571_040 Hb_000300_060--Hb_001571_040 Hb_002081_130 Hb_002081_130 Hb_000300_060--Hb_002081_130 Hb_000300_060--Hb_003010_030 Hb_070739_010 Hb_070739_010 Hb_000808_040--Hb_070739_010 Hb_015941_030 Hb_015941_030 Hb_000808_040--Hb_015941_030 Hb_086639_070 Hb_086639_070 Hb_000808_040--Hb_086639_070 Hb_008406_160 Hb_008406_160 Hb_000808_040--Hb_008406_160 Hb_000465_430 Hb_000465_430 Hb_000808_040--Hb_000465_430 Hb_003994_180 Hb_003994_180 Hb_000808_040--Hb_003994_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.8764 30.8599 15.3624 27.3962 62.5045 47.5738
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.9196 58.0682 29.3115 16.4146 17.8434

CAGE analysis