Hb_015981_010

Information

Type -
Description -
Location Contig15981: 6189-6506
Sequence    

Annotation

kegg
ID rcu:RCOM_0934280
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_002532308.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T239
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0934280 PE=4 SV=1
Gene Ontology
ID GO:0003824
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015981_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_008489_030 0.0233138705 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
3 Hb_000893_040 0.0311770593 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
4 Hb_020859_010 0.0322432066 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X6 [Populus euphratica]
5 Hb_003053_090 0.0448173952 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
6 Hb_004150_020 0.0476813204 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
7 Hb_002997_060 0.0522103562 - - hypothetical protein POPTR_0011s10730g [Populus trichocarpa]
8 Hb_000977_260 0.055035753 - - hypothetical protein CISIN_1g047084mg, partial [Citrus sinensis]
9 Hb_000853_280 0.061147925 - - PREDICTED: extensin-like [Jatropha curcas]
10 Hb_000696_200 0.0636694585 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
11 Hb_003251_010 0.0679930443 - - hypothetical protein MIMGU_mgv1a025126mg [Erythranthe guttata]
12 Hb_007933_010 0.0720747798 - - ATP-binding cassette transporter, putative [Ricinus communis]
13 Hb_027751_070 0.0732570989 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
14 Hb_006040_090 0.0755851037 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Hevea brasiliensis]
15 Hb_000349_150 0.0768939122 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
16 Hb_003228_060 0.0771977974 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003208_010 0.0773836605 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
18 Hb_000398_110 0.0794743204 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
19 Hb_002040_070 0.0806227736 - - -
20 Hb_000922_110 0.0808867769 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]

Gene co-expression network

sample Hb_015981_010 Hb_015981_010 Hb_008489_030 Hb_008489_030 Hb_015981_010--Hb_008489_030 Hb_000893_040 Hb_000893_040 Hb_015981_010--Hb_000893_040 Hb_020859_010 Hb_020859_010 Hb_015981_010--Hb_020859_010 Hb_003053_090 Hb_003053_090 Hb_015981_010--Hb_003053_090 Hb_004150_020 Hb_004150_020 Hb_015981_010--Hb_004150_020 Hb_002997_060 Hb_002997_060 Hb_015981_010--Hb_002997_060 Hb_008489_030--Hb_000893_040 Hb_008489_030--Hb_002997_060 Hb_000977_260 Hb_000977_260 Hb_008489_030--Hb_000977_260 Hb_008489_030--Hb_020859_010 Hb_003251_010 Hb_003251_010 Hb_008489_030--Hb_003251_010 Hb_000893_040--Hb_000977_260 Hb_000893_040--Hb_003251_010 Hb_000893_040--Hb_020859_010 Hb_000893_040--Hb_002997_060 Hb_020859_010--Hb_003053_090 Hb_020859_010--Hb_004150_020 Hb_027751_070 Hb_027751_070 Hb_020859_010--Hb_027751_070 Hb_003053_090--Hb_004150_020 Hb_002040_070 Hb_002040_070 Hb_003053_090--Hb_002040_070 Hb_003053_090--Hb_027751_070 Hb_006040_090 Hb_006040_090 Hb_003053_090--Hb_006040_090 Hb_004150_020--Hb_000893_040 Hb_004150_020--Hb_008489_030 Hb_004150_020--Hb_000977_260 Hb_000696_200 Hb_000696_200 Hb_002997_060--Hb_000696_200 Hb_043327_010 Hb_043327_010 Hb_002997_060--Hb_043327_010 Hb_005171_020 Hb_005171_020 Hb_002997_060--Hb_005171_020 Hb_003228_060 Hb_003228_060 Hb_002997_060--Hb_003228_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.977806 0.427871 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 10.181

CAGE analysis