Hb_016120_030

Information

Type -
Description -
Location Contig16120: 17042-17323
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa017926mg
description hypothetical protein
nr
ID KCW75705.1
description hypothetical protein EUGRSUZ_D00080 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059CCN2
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D00080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14458: 15732-17655
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016120_030 0.0 - - hypothetical protein EUGRSUZ_D00080 [Eucalyptus grandis]
2 Hb_004031_060 0.0648236549 - - hypothetical protein B456_007G3219002, partial [Gossypium raimondii]
3 Hb_002999_010 0.0932964682 - - PREDICTED: extracellular ribonuclease LE-like [Vitis vinifera]
4 Hb_140024_010 0.0993190338 - - PREDICTED: uncharacterized protein C167.05 [Vitis vinifera]
5 Hb_019053_050 0.1019165 - - ubiquitin-protein ligase, putative [Ricinus communis]
6 Hb_005245_030 0.1082598099 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g07570 [Jatropha curcas]
7 Hb_004926_010 0.111773216 - - hypothetical protein JCGZ_27059 [Jatropha curcas]
8 Hb_000480_050 0.1198183244 - - hypothetical protein PHAVU_004G154200g [Phaseolus vulgaris]
9 Hb_000959_200 0.1208675699 - - PREDICTED: uncharacterized protein LOC105636578 [Jatropha curcas]
10 Hb_005373_030 0.1336785666 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007477_020 0.1391803262 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA5 [Jatropha curcas]
12 Hb_001091_040 0.1470480707 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
13 Hb_159012_010 0.1502826464 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 [Jatropha curcas]
14 Hb_066207_020 0.1556574631 - - hypothetical protein JCGZ_22048 [Jatropha curcas]
15 Hb_001091_010 0.157885714 - - PREDICTED: putative disease resistance protein RGA4 isoform X2 [Malus domestica]
16 Hb_002215_020 0.1581911182 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
17 Hb_000194_030 0.1597137437 transcription factor TF Family: NAC NAC transcription factor 059 [Jatropha curcas]
18 Hb_003058_090 0.160107661 - - hypothetical protein POPTR_0001s28080g [Populus trichocarpa]
19 Hb_000139_460 0.1605025817 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
20 Hb_003371_030 0.1628585763 - - PREDICTED: RING-H2 finger protein ATL5 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_016120_030 Hb_016120_030 Hb_004031_060 Hb_004031_060 Hb_016120_030--Hb_004031_060 Hb_002999_010 Hb_002999_010 Hb_016120_030--Hb_002999_010 Hb_140024_010 Hb_140024_010 Hb_016120_030--Hb_140024_010 Hb_019053_050 Hb_019053_050 Hb_016120_030--Hb_019053_050 Hb_005245_030 Hb_005245_030 Hb_016120_030--Hb_005245_030 Hb_004926_010 Hb_004926_010 Hb_016120_030--Hb_004926_010 Hb_004031_060--Hb_004926_010 Hb_004031_060--Hb_002999_010 Hb_004031_060--Hb_019053_050 Hb_000480_050 Hb_000480_050 Hb_004031_060--Hb_000480_050 Hb_001091_040 Hb_001091_040 Hb_004031_060--Hb_001091_040 Hb_005373_030 Hb_005373_030 Hb_002999_010--Hb_005373_030 Hb_002999_010--Hb_000480_050 Hb_002999_010--Hb_004926_010 Hb_007477_020 Hb_007477_020 Hb_002999_010--Hb_007477_020 Hb_000959_200 Hb_000959_200 Hb_140024_010--Hb_000959_200 Hb_140024_010--Hb_002999_010 Hb_140024_010--Hb_004031_060 Hb_000237_010 Hb_000237_010 Hb_140024_010--Hb_000237_010 Hb_000959_150 Hb_000959_150 Hb_140024_010--Hb_000959_150 Hb_001335_040 Hb_001335_040 Hb_019053_050--Hb_001335_040 Hb_019053_050--Hb_001091_040 Hb_000086_530 Hb_000086_530 Hb_019053_050--Hb_000086_530 Hb_003371_030 Hb_003371_030 Hb_019053_050--Hb_003371_030 Hb_005245_030--Hb_005373_030 Hb_005245_030--Hb_002999_010 Hb_005245_030--Hb_004031_060 Hb_022597_010 Hb_022597_010 Hb_005245_030--Hb_022597_010 Hb_004617_010 Hb_004617_010 Hb_005245_030--Hb_004617_010 Hb_000194_030 Hb_000194_030 Hb_004926_010--Hb_000194_030 Hb_159012_010 Hb_159012_010 Hb_004926_010--Hb_159012_010 Hb_004926_010--Hb_000480_050 Hb_007426_100 Hb_007426_100 Hb_004926_010--Hb_007426_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.186926 31.5899 13.882 882.639 0 1.4264
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.32004 2.08324 2.38548 93.2335 26.8346

CAGE analysis