Hb_016297_010

Information

Type -
Description -
Location Contig16297: 25301-28247
Sequence    

Annotation

kegg
ID pop:POPTR_0008s02350g
description POPTRDRAFT_820216; hypothetical protein
nr
ID XP_012077890.1
description PREDICTED: uncharacterized protein LOC105638665 [Jatropha curcas]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID A0A067K142
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18422 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14795: 25766-26801 , PASA_asmbl_14796: 26814-28072 , PASA_asmbl_14797: 27190-28072 , PASA_asmbl_14798: 28376-28628
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016297_010 0.0 - - PREDICTED: uncharacterized protein LOC105638665 [Jatropha curcas]
2 Hb_023827_030 0.0646123208 - - PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic-like [Populus euphratica]
3 Hb_023582_010 0.0684995725 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000722_030 0.0699775155 - - putative plant disease resistance family protein [Populus trichocarpa]
5 Hb_019053_040 0.0731880276 - - cytochrome P450, putative [Ricinus communis]
6 Hb_001258_130 0.0739853716 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
7 Hb_105148_020 0.0754609888 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
8 Hb_001511_210 0.0844038369 - - PREDICTED: protein ESKIMO 1-like [Jatropha curcas]
9 Hb_000005_060 0.0877843226 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
10 Hb_129956_010 0.0891889884 - - PREDICTED: serine/threonine-protein kinase SAPK2 [Eucalyptus grandis]
11 Hb_002518_040 0.0900904853 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
12 Hb_006620_030 0.0905082044 - - nitrate reductase, putative [Ricinus communis]
13 Hb_002066_100 0.0931747628 - - PREDICTED: protein disulfide-isomerase SCO2 [Jatropha curcas]
14 Hb_001680_020 0.0932619778 desease resistance Gene Name: RPW8 Disease resistance protein ADR1, putative [Ricinus communis]
15 Hb_027684_010 0.096903474 - - hypothetical protein RCOM_0504250 [Ricinus communis]
16 Hb_000282_020 0.0998396946 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
17 Hb_165101_010 0.1002883432 - - PREDICTED: putative wall-associated receptor kinase-like 16 [Nelumbo nucifera]
18 Hb_001166_010 0.1012095345 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
19 Hb_005276_140 0.1023102504 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000312_100 0.1028134998 - - PREDICTED: septum-promoting GTP-binding protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_016297_010 Hb_016297_010 Hb_023827_030 Hb_023827_030 Hb_016297_010--Hb_023827_030 Hb_023582_010 Hb_023582_010 Hb_016297_010--Hb_023582_010 Hb_000722_030 Hb_000722_030 Hb_016297_010--Hb_000722_030 Hb_019053_040 Hb_019053_040 Hb_016297_010--Hb_019053_040 Hb_001258_130 Hb_001258_130 Hb_016297_010--Hb_001258_130 Hb_105148_020 Hb_105148_020 Hb_016297_010--Hb_105148_020 Hb_000069_440 Hb_000069_440 Hb_023827_030--Hb_000069_440 Hb_000282_020 Hb_000282_020 Hb_023827_030--Hb_000282_020 Hb_023827_030--Hb_019053_040 Hb_023827_030--Hb_023582_010 Hb_023827_030--Hb_105148_020 Hb_023582_010--Hb_019053_040 Hb_023582_010--Hb_000722_030 Hb_023582_010--Hb_000282_020 Hb_000005_060 Hb_000005_060 Hb_023582_010--Hb_000005_060 Hb_023582_010--Hb_105148_020 Hb_002518_040 Hb_002518_040 Hb_000722_030--Hb_002518_040 Hb_002066_100 Hb_002066_100 Hb_000722_030--Hb_002066_100 Hb_000722_030--Hb_019053_040 Hb_027684_010 Hb_027684_010 Hb_000722_030--Hb_027684_010 Hb_019053_040--Hb_000282_020 Hb_001166_010 Hb_001166_010 Hb_019053_040--Hb_001166_010 Hb_019053_040--Hb_105148_020 Hb_019053_040--Hb_002066_100 Hb_001511_210 Hb_001511_210 Hb_001258_130--Hb_001511_210 Hb_001258_130--Hb_105148_020 Hb_000139_040 Hb_000139_040 Hb_001258_130--Hb_000139_040 Hb_001258_130--Hb_002066_100 Hb_001258_130--Hb_000722_030 Hb_006620_030 Hb_006620_030 Hb_105148_020--Hb_006620_030 Hb_105148_020--Hb_001166_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.154283 2.95837 1.28343 0.0100552 0.0263632
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0500122 1.36575

CAGE analysis