Hb_016333_010

Information

Type -
Description -
Location Contig16333: 7473-9986
Sequence    

Annotation

kegg
ID vvi:100266449
description (3S,6E)-nerolidol synthase 1-like
nr
ID XP_012091436.1
description PREDICTED: probable terpene synthase 13 [Jatropha curcas]
swissprot
ID B9RXW4
description Probable terpene synthase 13 OS=Ricinus communis GN=TPS13 PE=3 SV=1
trembl
ID A0A067JDK5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21304 PE=4 SV=1
Gene Ontology
ID GO:0000287
description ( )-nerolidol synthase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14905: 8336-9111 , PASA_asmbl_14906: 9305-9773
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016333_010 0.0 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
2 Hb_001863_330 0.0520013806 - - RNA-binding region-containing protein, putative [Ricinus communis]
3 Hb_127839_010 0.0617194443 - - hypothetical protein PRUPE_ppa000956mg [Prunus persica]
4 Hb_007632_070 0.0664585322 - - kinase, putative [Ricinus communis]
5 Hb_087992_010 0.0817777159 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
6 Hb_001958_010 0.0953314276 - - hypothetical protein CICLE_v100078532mg, partial [Citrus clementina]
7 Hb_004037_040 0.0968873713 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
8 Hb_000563_470 0.0995243266 - - PREDICTED: uncharacterized protein LOC105643461 [Jatropha curcas]
9 Hb_000676_360 0.1052033862 - - hypothetical protein POPTR_0007s13690g [Populus trichocarpa]
10 Hb_039222_010 0.1075987339 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Jatropha curcas]
11 Hb_007218_040 0.1076173903 - - Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]
12 Hb_001140_300 0.1084508616 - - PREDICTED: tubulin beta-1 chain [Cicer arietinum]
13 Hb_000189_180 0.1086292684 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
14 Hb_002224_020 0.1114544582 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
15 Hb_111985_100 0.1174524435 - - beta-galactosidase, putative [Ricinus communis]
16 Hb_174639_010 0.1211690992 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_005181_170 0.1219393017 - - PREDICTED: aldehyde dehydrogenase 22A1 [Jatropha curcas]
18 Hb_004076_060 0.1221207702 - - PREDICTED: UDP-glycosyltransferase 82A1 [Jatropha curcas]
19 Hb_149882_010 0.1241574194 - - PREDICTED: probable receptor protein kinase TMK1 [Populus euphratica]
20 Hb_001047_090 0.1252366961 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP16-like [Jatropha curcas]

Gene co-expression network

sample Hb_016333_010 Hb_016333_010 Hb_001863_330 Hb_001863_330 Hb_016333_010--Hb_001863_330 Hb_127839_010 Hb_127839_010 Hb_016333_010--Hb_127839_010 Hb_007632_070 Hb_007632_070 Hb_016333_010--Hb_007632_070 Hb_087992_010 Hb_087992_010 Hb_016333_010--Hb_087992_010 Hb_001958_010 Hb_001958_010 Hb_016333_010--Hb_001958_010 Hb_004037_040 Hb_004037_040 Hb_016333_010--Hb_004037_040 Hb_001863_330--Hb_087992_010 Hb_001863_330--Hb_127839_010 Hb_001863_330--Hb_007632_070 Hb_002224_020 Hb_002224_020 Hb_001863_330--Hb_002224_020 Hb_000185_180 Hb_000185_180 Hb_001863_330--Hb_000185_180 Hb_127839_010--Hb_007632_070 Hb_127839_010--Hb_087992_010 Hb_149882_010 Hb_149882_010 Hb_127839_010--Hb_149882_010 Hb_127839_010--Hb_002224_020 Hb_000563_470 Hb_000563_470 Hb_007632_070--Hb_000563_470 Hb_007632_070--Hb_087992_010 Hb_001140_300 Hb_001140_300 Hb_007632_070--Hb_001140_300 Hb_087992_010--Hb_002224_020 Hb_087992_010--Hb_149882_010 Hb_000189_180 Hb_000189_180 Hb_001958_010--Hb_000189_180 Hb_004076_060 Hb_004076_060 Hb_001958_010--Hb_004076_060 Hb_032572_010 Hb_032572_010 Hb_001958_010--Hb_032572_010 Hb_005731_010 Hb_005731_010 Hb_001958_010--Hb_005731_010 Hb_000109_140 Hb_000109_140 Hb_001958_010--Hb_000109_140 Hb_000941_110 Hb_000941_110 Hb_001958_010--Hb_000941_110 Hb_001514_030 Hb_001514_030 Hb_004037_040--Hb_001514_030 Hb_001079_060 Hb_001079_060 Hb_004037_040--Hb_001079_060 Hb_004037_040--Hb_000189_180 Hb_004037_040--Hb_001958_010 Hb_168918_010 Hb_168918_010 Hb_004037_040--Hb_168918_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.604683 0.814204 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0649366 0.330018

CAGE analysis