Hb_016347_010

Information

Type -
Description -
Location Contig16347: 3027-12632
Sequence    

Annotation

kegg
ID rcu:RCOM_0802800
description protein transporter, putative
nr
ID XP_002516559.1
description protein transporter, putative [Ricinus communis]
swissprot
ID O88746
description Target of Myb protein 1 OS=Mus musculus GN=Tom1 PE=1 SV=1
trembl
ID B9RS40
description Protein transporter, putative OS=Ricinus communis GN=RCOM_0802800 PE=4 SV=1
Gene Ontology
ID GO:0005622
description tom1-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14919: 3059-12600
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016347_010 0.0 - - protein transporter, putative [Ricinus communis]
2 Hb_000363_040 0.0563177875 - - Protein transport protein Sec24A, putative [Ricinus communis]
3 Hb_000327_250 0.0604737353 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
4 Hb_004677_050 0.0630267917 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
5 Hb_002908_050 0.0719112718 - - hypothetical protein CISIN_1g0022902mg, partial [Citrus sinensis]
6 Hb_003544_030 0.0731706792 - - PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]
7 Hb_021576_010 0.0738009337 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
8 Hb_005663_110 0.0769387383 - - PREDICTED: large proline-rich protein BAG6 isoform X2 [Jatropha curcas]
9 Hb_004096_110 0.0773798968 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
10 Hb_000984_170 0.0773935564 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
11 Hb_001642_070 0.0777473996 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
12 Hb_005305_050 0.0808377918 - - PREDICTED: armadillo repeat-containing protein 8 [Jatropha curcas]
13 Hb_000190_090 0.0809815017 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]
14 Hb_004208_050 0.0824173841 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
15 Hb_004880_150 0.082813377 - - PREDICTED: uncharacterized protein LOC105632834 [Jatropha curcas]
16 Hb_011883_020 0.0832486475 - - PREDICTED: LOW QUALITY PROTEIN: aspartate--tRNA ligase, cytoplasmic-like [Jatropha curcas]
17 Hb_003777_290 0.0843976861 - - polypyrimidine tract binding protein, putative [Ricinus communis]
18 Hb_003776_060 0.0868987843 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
19 Hb_000109_180 0.0871049896 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
20 Hb_042474_010 0.0876569428 - - PREDICTED: adenylyltransferase and sulfurtransferase MOCS3 [Jatropha curcas]

Gene co-expression network

sample Hb_016347_010 Hb_016347_010 Hb_000363_040 Hb_000363_040 Hb_016347_010--Hb_000363_040 Hb_000327_250 Hb_000327_250 Hb_016347_010--Hb_000327_250 Hb_004677_050 Hb_004677_050 Hb_016347_010--Hb_004677_050 Hb_002908_050 Hb_002908_050 Hb_016347_010--Hb_002908_050 Hb_003544_030 Hb_003544_030 Hb_016347_010--Hb_003544_030 Hb_021576_010 Hb_021576_010 Hb_016347_010--Hb_021576_010 Hb_000363_040--Hb_002908_050 Hb_005305_050 Hb_005305_050 Hb_000363_040--Hb_005305_050 Hb_000363_040--Hb_004677_050 Hb_000109_180 Hb_000109_180 Hb_000363_040--Hb_000109_180 Hb_000976_100 Hb_000976_100 Hb_000363_040--Hb_000976_100 Hb_000327_250--Hb_003544_030 Hb_005663_110 Hb_005663_110 Hb_000327_250--Hb_005663_110 Hb_004096_110 Hb_004096_110 Hb_000327_250--Hb_004096_110 Hb_000327_250--Hb_021576_010 Hb_001434_080 Hb_001434_080 Hb_000327_250--Hb_001434_080 Hb_002213_020 Hb_002213_020 Hb_004677_050--Hb_002213_020 Hb_000984_170 Hb_000984_170 Hb_004677_050--Hb_000984_170 Hb_004677_050--Hb_005663_110 Hb_004208_050 Hb_004208_050 Hb_004677_050--Hb_004208_050 Hb_002749_060 Hb_002749_060 Hb_004677_050--Hb_002749_060 Hb_001876_010 Hb_001876_010 Hb_002908_050--Hb_001876_010 Hb_000189_550 Hb_000189_550 Hb_002908_050--Hb_000189_550 Hb_002908_050--Hb_000984_170 Hb_000011_060 Hb_000011_060 Hb_002908_050--Hb_000011_060 Hb_004480_100 Hb_004480_100 Hb_002908_050--Hb_004480_100 Hb_003544_030--Hb_005663_110 Hb_003544_030--Hb_001434_080 Hb_006452_120 Hb_006452_120 Hb_003544_030--Hb_006452_120 Hb_017387_010 Hb_017387_010 Hb_003544_030--Hb_017387_010 Hb_000979_220 Hb_000979_220 Hb_021576_010--Hb_000979_220 Hb_021576_010--Hb_004096_110 Hb_003777_290 Hb_003777_290 Hb_021576_010--Hb_003777_290 Hb_001828_180 Hb_001828_180 Hb_021576_010--Hb_001828_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.18156 6.93378 4.7363 8.92548 4.16815 4.35768
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.58246 5.67211 6.25344 13.3634 8.54156

CAGE analysis