Hb_016461_020

Information

Type -
Description -
Location Contig16461: 14545-18615
Sequence    

Annotation

kegg
ID rcu:RCOM_0903630
description hypothetical protein
nr
ID XP_002518435.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RXG6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0903630 PE=4 SV=1
Gene Ontology
ID GO:0016020
description core-2 i-branching beta- -n-acetylglucosaminyltransferase family protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15137: 14652-18357 , PASA_asmbl_15138: 18358-18571
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016461_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000297_030 0.0751742378 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
3 Hb_000890_030 0.0753499978 - - plastid CUL1 [Hevea brasiliensis]
4 Hb_005305_100 0.0771691863 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
5 Hb_000046_600 0.0773583692 - - PREDICTED: cullin-1-like [Jatropha curcas]
6 Hb_006468_010 0.0776254958 - - PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]
7 Hb_000579_130 0.0812952032 - - ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_004544_040 0.0827565568 - - hypothetical protein PHAVU_010G103000g [Phaseolus vulgaris]
9 Hb_001408_110 0.0829537858 - - hypothetical protein EUGRSUZ_I02762 [Eucalyptus grandis]
10 Hb_021165_010 0.0831972428 - - PREDICTED: splicing factor U2af large subunit B-like isoform X1 [Jatropha curcas]
11 Hb_044486_020 0.0853606799 - - CASTOR protein [Glycine max]
12 Hb_002045_170 0.086401847 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
13 Hb_000702_090 0.0865736087 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
14 Hb_005288_140 0.0869514247 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like [Jatropha curcas]
15 Hb_001250_050 0.0870473456 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
16 Hb_024650_080 0.0871155693 - - PREDICTED: BTB/POZ domain-containing protein At3g09030 [Jatropha curcas]
17 Hb_001878_060 0.0872623789 transcription factor TF Family: G2-like hypothetical protein POPTR_0007s15110g [Populus trichocarpa]
18 Hb_008165_020 0.0881944528 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
19 Hb_001699_010 0.0888345562 - - drought-inducible protein [Manihot esculenta]
20 Hb_000336_020 0.0893385325 - - PREDICTED: phospholipid-transporting ATPase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_016461_020 Hb_016461_020 Hb_000297_030 Hb_000297_030 Hb_016461_020--Hb_000297_030 Hb_000890_030 Hb_000890_030 Hb_016461_020--Hb_000890_030 Hb_005305_100 Hb_005305_100 Hb_016461_020--Hb_005305_100 Hb_000046_600 Hb_000046_600 Hb_016461_020--Hb_000046_600 Hb_006468_010 Hb_006468_010 Hb_016461_020--Hb_006468_010 Hb_000579_130 Hb_000579_130 Hb_016461_020--Hb_000579_130 Hb_000297_030--Hb_006468_010 Hb_158845_060 Hb_158845_060 Hb_000297_030--Hb_158845_060 Hb_000890_160 Hb_000890_160 Hb_000297_030--Hb_000890_160 Hb_000297_030--Hb_000046_600 Hb_024758_020 Hb_024758_020 Hb_000297_030--Hb_024758_020 Hb_000580_030 Hb_000580_030 Hb_000890_030--Hb_000580_030 Hb_012760_030 Hb_012760_030 Hb_000890_030--Hb_012760_030 Hb_000098_050 Hb_000098_050 Hb_000890_030--Hb_000098_050 Hb_044486_020 Hb_044486_020 Hb_000890_030--Hb_044486_020 Hb_000805_210 Hb_000805_210 Hb_000890_030--Hb_000805_210 Hb_000956_040 Hb_000956_040 Hb_005305_100--Hb_000956_040 Hb_000300_030 Hb_000300_030 Hb_005305_100--Hb_000300_030 Hb_000172_360 Hb_000172_360 Hb_005305_100--Hb_000172_360 Hb_008165_020 Hb_008165_020 Hb_005305_100--Hb_008165_020 Hb_000179_190 Hb_000179_190 Hb_005305_100--Hb_000179_190 Hb_000110_350 Hb_000110_350 Hb_005305_100--Hb_000110_350 Hb_005403_010 Hb_005403_010 Hb_000046_600--Hb_005403_010 Hb_000529_060 Hb_000529_060 Hb_000046_600--Hb_000529_060 Hb_023344_140 Hb_023344_140 Hb_000046_600--Hb_023344_140 Hb_005333_140 Hb_005333_140 Hb_000046_600--Hb_005333_140 Hb_000994_020 Hb_000994_020 Hb_000046_600--Hb_000994_020 Hb_000977_300 Hb_000977_300 Hb_000046_600--Hb_000977_300 Hb_006468_010--Hb_000890_160 Hb_003636_080 Hb_003636_080 Hb_006468_010--Hb_003636_080 Hb_115137_010 Hb_115137_010 Hb_006468_010--Hb_115137_010 Hb_089140_040 Hb_089140_040 Hb_006468_010--Hb_089140_040 Hb_001085_080 Hb_001085_080 Hb_000579_130--Hb_001085_080 Hb_010042_030 Hb_010042_030 Hb_000579_130--Hb_010042_030 Hb_001558_040 Hb_001558_040 Hb_000579_130--Hb_001558_040 Hb_016172_030 Hb_016172_030 Hb_000579_130--Hb_016172_030 Hb_007137_050 Hb_007137_050 Hb_000579_130--Hb_007137_050 Hb_002007_260 Hb_002007_260 Hb_000579_130--Hb_002007_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.18906 3.21596 3.14838 3.31188 1.30292 1.76516
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.760335 1.36147 0.857222 2.40795 1.9968

CAGE analysis