Hb_016461_030

Information

Type -
Description -
Location Contig16461: 23583-31890
Sequence    

Annotation

kegg
ID rcu:RCOM_0903620
description leucyl-tRNA synthetase, putative (EC:6.1.1.4)
nr
ID XP_012091308.1
description PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
swissprot
ID Q2S415
description Leucine--tRNA ligase OS=Salinibacter ruber (strain DSM 13855 / M31) GN=leuS PE=3 SV=1
trembl
ID A0A067JMK1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21180 PE=3 SV=1
Gene Ontology
ID GO:0005739
description leucine--trna mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15139: 23746-30773 , PASA_asmbl_15140: 23580-31877 , PASA_asmbl_15141: 31278-31520
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016461_030 0.0 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
2 Hb_002282_070 0.0612862576 - - PREDICTED: protein DJ-1 homolog C isoform X2 [Jatropha curcas]
3 Hb_000816_200 0.067480831 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
4 Hb_000345_370 0.0713901337 - - PREDICTED: probable Xaa-Pro aminopeptidase P [Jatropha curcas]
5 Hb_003777_020 0.0745819103 - - Fructose-1,6-bisphosphatase, cytosolic, putative [Ricinus communis]
6 Hb_002542_160 0.076460601 - - PREDICTED: peptide chain release factor APG3, chloroplastic [Jatropha curcas]
7 Hb_001427_040 0.0813955613 - - PREDICTED: uncharacterized protein LOC105637784 [Jatropha curcas]
8 Hb_000309_020 0.082031736 - - PREDICTED: uncharacterized protein LOC105641764 [Jatropha curcas]
9 Hb_002685_060 0.0826517124 - - 30S ribosomal protein S5, putative [Ricinus communis]
10 Hb_003124_120 0.0831839452 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
11 Hb_029920_030 0.084758236 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
12 Hb_000661_090 0.0880673021 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
13 Hb_001723_030 0.0885514149 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
14 Hb_005276_010 0.0888469153 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
15 Hb_000480_040 0.0914606657 - - PREDICTED: L-Ala-D/L-amino acid epimerase isoform X2 [Jatropha curcas]
16 Hb_000189_450 0.0932768744 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
17 Hb_001677_220 0.0941371121 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
18 Hb_000059_270 0.0948831235 - - superoxide dismutase [Fe], chloroplastic [Jatropha curcas]
19 Hb_000085_070 0.0956936743 - - PREDICTED: trigger factor-like protein TIG, Chloroplastic isoform X1 [Jatropha curcas]
20 Hb_000220_210 0.0960122104 - - PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_016461_030 Hb_016461_030 Hb_002282_070 Hb_002282_070 Hb_016461_030--Hb_002282_070 Hb_000816_200 Hb_000816_200 Hb_016461_030--Hb_000816_200 Hb_000345_370 Hb_000345_370 Hb_016461_030--Hb_000345_370 Hb_003777_020 Hb_003777_020 Hb_016461_030--Hb_003777_020 Hb_002542_160 Hb_002542_160 Hb_016461_030--Hb_002542_160 Hb_001427_040 Hb_001427_040 Hb_016461_030--Hb_001427_040 Hb_002282_070--Hb_001427_040 Hb_002282_070--Hb_000345_370 Hb_002282_070--Hb_003777_020 Hb_002685_060 Hb_002685_060 Hb_002282_070--Hb_002685_060 Hb_000144_060 Hb_000144_060 Hb_002282_070--Hb_000144_060 Hb_001195_770 Hb_001195_770 Hb_000816_200--Hb_001195_770 Hb_003124_120 Hb_003124_120 Hb_000816_200--Hb_003124_120 Hb_029920_030 Hb_029920_030 Hb_000816_200--Hb_029920_030 Hb_000189_450 Hb_000189_450 Hb_000816_200--Hb_000189_450 Hb_007441_310 Hb_007441_310 Hb_000816_200--Hb_007441_310 Hb_000345_370--Hb_000144_060 Hb_000345_370--Hb_002542_160 Hb_000220_210 Hb_000220_210 Hb_000345_370--Hb_000220_210 Hb_000309_020 Hb_000309_020 Hb_000345_370--Hb_000309_020 Hb_003777_020--Hb_002685_060 Hb_000661_090 Hb_000661_090 Hb_003777_020--Hb_000661_090 Hb_003777_020--Hb_000345_370 Hb_003777_020--Hb_001427_040 Hb_002542_160--Hb_000220_210 Hb_002542_160--Hb_000309_020 Hb_000085_070 Hb_000085_070 Hb_002542_160--Hb_000085_070 Hb_000032_500 Hb_000032_500 Hb_002542_160--Hb_000032_500 Hb_001427_040--Hb_000220_210 Hb_001427_040--Hb_002542_160 Hb_001427_040--Hb_000345_370 Hb_002660_190 Hb_002660_190 Hb_001427_040--Hb_002660_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.17602 4.84514 15.9646 9.63289 6.01378 7.75539
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.13069 7.58443 6.07137 8.67919 39.699

CAGE analysis