Hb_016522_010

Information

Type -
Description -
Location Contig16522: 23259-25947
Sequence    

Annotation

kegg
ID rcu:RCOM_1109000
description carbonyl reductase, putative (EC:1.1.1.189)
nr
ID XP_012066288.1
description PREDICTED: short-chain dehydrogenase/reductase 2b-like [Jatropha curcas]
swissprot
ID Q9ZUH5
description Short-chain dehydrogenase/reductase 2b OS=Arabidopsis thaliana GN=SDR2b PE=2 SV=1
trembl
ID A0A067L367
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23848 PE=3 SV=1
Gene Ontology
ID GO:0016491
description short-chain dehydrogenase reductase 2b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15227: 23169-25495 , PASA_asmbl_15228: 25531-25808
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016522_010 0.0 - - PREDICTED: short-chain dehydrogenase/reductase 2b-like [Jatropha curcas]
2 Hb_000227_070 0.0900542224 - - PREDICTED: ATP-dependent (S)-NAD(P)H-hydrate dehydratase isoform X2 [Jatropha curcas]
3 Hb_001414_030 0.0949116749 - - PREDICTED: aspartate-semialdehyde dehydrogenase [Jatropha curcas]
4 Hb_001214_090 0.0957350866 - - PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal [Jatropha curcas]
5 Hb_000510_240 0.1006065192 desease resistance Gene Name: PRK ATP binding protein, putative [Ricinus communis]
6 Hb_000228_110 0.1028295608 - - unnamed protein product [Vitis vinifera]
7 Hb_000210_120 0.1033236289 - - PREDICTED: uncharacterized protein LOC105635829 isoform X1 [Jatropha curcas]
8 Hb_003266_100 0.1041124602 - - Isomerase protein [Gossypium arboreum]
9 Hb_000096_160 0.1044540843 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
10 Hb_005914_170 0.1049265514 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
11 Hb_019053_030 0.1077654289 - - PREDICTED: sulfite oxidase [Jatropha curcas]
12 Hb_006452_100 0.1100322473 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
13 Hb_000103_270 0.1103967899 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [Fragaria vesca subsp. vesca]
14 Hb_002534_120 0.1114675894 - - PREDICTED: protein DCL, chloroplastic [Jatropha curcas]
15 Hb_001085_240 0.1127525529 - - PREDICTED: probable calcium-binding protein CML22 isoform X1 [Jatropha curcas]
16 Hb_000504_070 0.1138067258 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
17 Hb_000190_090 0.114290803 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]
18 Hb_004880_150 0.1145084423 - - PREDICTED: uncharacterized protein LOC105632834 [Jatropha curcas]
19 Hb_001332_040 0.1145456202 - - PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca]
20 Hb_000286_060 0.1156804494 - - PREDICTED: uncharacterized protein LOC105633357 [Jatropha curcas]

Gene co-expression network

sample Hb_016522_010 Hb_016522_010 Hb_000227_070 Hb_000227_070 Hb_016522_010--Hb_000227_070 Hb_001414_030 Hb_001414_030 Hb_016522_010--Hb_001414_030 Hb_001214_090 Hb_001214_090 Hb_016522_010--Hb_001214_090 Hb_000510_240 Hb_000510_240 Hb_016522_010--Hb_000510_240 Hb_000228_110 Hb_000228_110 Hb_016522_010--Hb_000228_110 Hb_000210_120 Hb_000210_120 Hb_016522_010--Hb_000210_120 Hb_000227_070--Hb_000510_240 Hb_010174_150 Hb_010174_150 Hb_000227_070--Hb_010174_150 Hb_001085_240 Hb_001085_240 Hb_000227_070--Hb_001085_240 Hb_000096_160 Hb_000096_160 Hb_000227_070--Hb_000096_160 Hb_179924_010 Hb_179924_010 Hb_000227_070--Hb_179924_010 Hb_000329_760 Hb_000329_760 Hb_001414_030--Hb_000329_760 Hb_000982_080 Hb_000982_080 Hb_001414_030--Hb_000982_080 Hb_034380_020 Hb_034380_020 Hb_001414_030--Hb_034380_020 Hb_001357_300 Hb_001357_300 Hb_001414_030--Hb_001357_300 Hb_011942_090 Hb_011942_090 Hb_001414_030--Hb_011942_090 Hb_001623_160 Hb_001623_160 Hb_001214_090--Hb_001623_160 Hb_010863_010 Hb_010863_010 Hb_001214_090--Hb_010863_010 Hb_000190_090 Hb_000190_090 Hb_001214_090--Hb_000190_090 Hb_119494_010 Hb_119494_010 Hb_001214_090--Hb_119494_010 Hb_003266_100 Hb_003266_100 Hb_001214_090--Hb_003266_100 Hb_000510_240--Hb_000210_120 Hb_002193_030 Hb_002193_030 Hb_000510_240--Hb_002193_030 Hb_000103_270 Hb_000103_270 Hb_000510_240--Hb_000103_270 Hb_005914_170 Hb_005914_170 Hb_000510_240--Hb_005914_170 Hb_001348_020 Hb_001348_020 Hb_000228_110--Hb_001348_020 Hb_000228_110--Hb_000096_160 Hb_019053_030 Hb_019053_030 Hb_000228_110--Hb_019053_030 Hb_000228_110--Hb_001085_240 Hb_002889_030 Hb_002889_030 Hb_000228_110--Hb_002889_030 Hb_003633_050 Hb_003633_050 Hb_000228_110--Hb_003633_050 Hb_000210_120--Hb_005914_170 Hb_000210_120--Hb_000103_270 Hb_003098_020 Hb_003098_020 Hb_000210_120--Hb_003098_020 Hb_007928_030 Hb_007928_030 Hb_000210_120--Hb_007928_030 Hb_011344_120 Hb_011344_120 Hb_000210_120--Hb_011344_120 Hb_000136_350 Hb_000136_350 Hb_000210_120--Hb_000136_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.13031 3.63852 4.29988 6.46007 1.97245 4.43663
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.17941 9.25284 6.12812 15.145 6.22163

CAGE analysis