Hb_016604_020

Information

Type -
Description -
Location Contig16604: 34329-35323
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15313: 34685-35224
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016604_020 0.0 - - -
2 Hb_002053_060 0.0969872267 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Jatropha curcas]
3 Hb_002609_280 0.1185782463 - - villin 1-4, putative [Ricinus communis]
4 Hb_003216_100 0.1204756742 - - PREDICTED: uncharacterized protein LOC105641496 [Jatropha curcas]
5 Hb_002182_060 0.1222032231 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATXR6 [Jatropha curcas]
6 Hb_003992_080 0.1229034176 - - PREDICTED: protein LURP-one-related 5 [Jatropha curcas]
7 Hb_000264_090 0.1239244095 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
8 Hb_000563_240 0.1313042545 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
9 Hb_009787_040 0.1322612938 desease resistance Gene Name: AAA_17 PREDICTED: uncharacterized protein LOC105135462 isoform X2 [Populus euphratica]
10 Hb_002298_050 0.1322679712 - - serine/threonine-protein kinase, putative [Ricinus communis]
11 Hb_000099_060 0.1330848065 - - hypothetical protein JCGZ_23948 [Jatropha curcas]
12 Hb_004951_040 0.133112374 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31790-like [Jatropha curcas]
13 Hb_001638_020 0.1339693908 - - PREDICTED: protein OSB1, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_009486_190 0.1360462438 - - ATP binding protein, putative [Ricinus communis]
15 Hb_000617_050 0.1362259915 - - PREDICTED: uncharacterized protein LOC105647466 [Jatropha curcas]
16 Hb_019654_090 0.1363155014 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Jatropha curcas]
17 Hb_155764_020 0.1395126916 - - hypothetical protein B456_009G265500 [Gossypium raimondii]
18 Hb_003106_050 0.1395350271 transcription factor TF Family: Orphans hypothetical protein POPTR_0015s08130g [Populus trichocarpa]
19 Hb_008453_090 0.1409642259 - - hypothetical protein JCGZ_08177 [Jatropha curcas]
20 Hb_034406_020 0.1410625585 - - PREDICTED: jmjC domain-containing protein 7 [Jatropha curcas]

Gene co-expression network

sample Hb_016604_020 Hb_016604_020 Hb_002053_060 Hb_002053_060 Hb_016604_020--Hb_002053_060 Hb_002609_280 Hb_002609_280 Hb_016604_020--Hb_002609_280 Hb_003216_100 Hb_003216_100 Hb_016604_020--Hb_003216_100 Hb_002182_060 Hb_002182_060 Hb_016604_020--Hb_002182_060 Hb_003992_080 Hb_003992_080 Hb_016604_020--Hb_003992_080 Hb_000264_090 Hb_000264_090 Hb_016604_020--Hb_000264_090 Hb_002759_230 Hb_002759_230 Hb_002053_060--Hb_002759_230 Hb_003106_050 Hb_003106_050 Hb_002053_060--Hb_003106_050 Hb_000099_060 Hb_000099_060 Hb_002053_060--Hb_000099_060 Hb_002909_060 Hb_002909_060 Hb_002053_060--Hb_002909_060 Hb_002053_060--Hb_002182_060 Hb_002609_280--Hb_000264_090 Hb_000196_090 Hb_000196_090 Hb_002609_280--Hb_000196_090 Hb_007101_130 Hb_007101_130 Hb_002609_280--Hb_007101_130 Hb_007672_010 Hb_007672_010 Hb_002609_280--Hb_007672_010 Hb_000030_100 Hb_000030_100 Hb_002609_280--Hb_000030_100 Hb_002609_280--Hb_002182_060 Hb_000883_050 Hb_000883_050 Hb_003216_100--Hb_000883_050 Hb_001248_080 Hb_001248_080 Hb_003216_100--Hb_001248_080 Hb_005333_130 Hb_005333_130 Hb_003216_100--Hb_005333_130 Hb_000923_070 Hb_000923_070 Hb_003216_100--Hb_000923_070 Hb_000531_020 Hb_000531_020 Hb_003216_100--Hb_000531_020 Hb_007101_150 Hb_007101_150 Hb_003216_100--Hb_007101_150 Hb_008173_090 Hb_008173_090 Hb_002182_060--Hb_008173_090 Hb_002182_060--Hb_000099_060 Hb_000970_010 Hb_000970_010 Hb_002182_060--Hb_000970_010 Hb_000200_100 Hb_000200_100 Hb_002182_060--Hb_000200_100 Hb_002182_060--Hb_003106_050 Hb_002301_140 Hb_002301_140 Hb_002182_060--Hb_002301_140 Hb_003992_080--Hb_002053_060 Hb_033772_050 Hb_033772_050 Hb_003992_080--Hb_033772_050 Hb_002298_050 Hb_002298_050 Hb_003992_080--Hb_002298_050 Hb_000094_110 Hb_000094_110 Hb_003992_080--Hb_000094_110 Hb_009486_190 Hb_009486_190 Hb_003992_080--Hb_009486_190 Hb_001998_050 Hb_001998_050 Hb_000264_090--Hb_001998_050 Hb_002925_030 Hb_002925_030 Hb_000264_090--Hb_002925_030 Hb_155764_020 Hb_155764_020 Hb_000264_090--Hb_155764_020 Hb_003398_120 Hb_003398_120 Hb_000264_090--Hb_003398_120 Hb_000264_090--Hb_001248_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.84265 6.43434 1.17572 1.99287 5.45747 5.71984
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.17598 23.5946 13.7265 2.37767 0.911394

CAGE analysis