Hb_016604_030

Information

Type -
Description -
Location Contig16604: 37123-37434
Sequence    

Annotation

kegg
ID ppp:PHYPADRAFT_152862
description HFO1503; histone H4
nr
ID ACG30677.1
description histone H4 [Zea mays]
swissprot
ID P0CG89
description Histone H4 OS=Glycine max PE=3 SV=1
trembl
ID Q5NSW2
description Histone H4 (Fragment) OS=Fragaria ananassa PE=2 SV=1
Gene Ontology
ID GO:0000786
description histone h4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15314: 36911-38171 , PASA_asmbl_15315: 37712-38160
cDNA
(Sanger)
(ID:Location)		 003_L14.ab1: 36920-38171 , 026_F17.ab1: 36919-38171 , 026_L18.ab1: 36919-38171 , 049_P22.ab1: 36911-38171

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016604_030 0.0 - - histone H4 [Zea mays]
2 Hb_000635_070 0.0917682192 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
3 Hb_082006_010 0.1144745489 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000473_020 0.116866542 - - expressed protein, putative [Ricinus communis]
5 Hb_005000_330 0.1222294338 - - conserved hypothetical protein [Ricinus communis]
6 Hb_182964_010 0.1223116815 - - PREDICTED: uncharacterized protein LOC105642044 isoform X2 [Jatropha curcas]
7 Hb_003536_110 0.1279422588 - - PREDICTED: probable small nuclear ribonucleoprotein F [Jatropha curcas]
8 Hb_080601_020 0.1279497 - - PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]
9 Hb_031089_040 0.1299917847 - - thioredoxin H-type 1 [Hevea brasiliensis]
10 Hb_004784_020 0.1312299656 - - PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]
11 Hb_066768_010 0.1395760617 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
12 Hb_129672_010 0.1400455484 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
13 Hb_000641_020 0.1403842744 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
14 Hb_000710_070 0.1415699119 - - PREDICTED: uncharacterized protein LOC105645553 [Jatropha curcas]
15 Hb_001220_010 0.1430171558 - - hypothetical protein JCGZ_00411 [Jatropha curcas]
16 Hb_004602_030 0.1454348366 - - histone H4 [Zea mays]
17 Hb_006452_110 0.1459776239 - - Ubiquinol-cytochrome c reductase complex 7.8 kDa protein, putative [Ricinus communis]
18 Hb_000326_090 0.1467655054 - - PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Nelumbo nucifera]
19 Hb_004669_030 0.1482456666 - - -
20 Hb_012675_070 0.149050454 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_016604_030 Hb_016604_030 Hb_000635_070 Hb_000635_070 Hb_016604_030--Hb_000635_070 Hb_082006_010 Hb_082006_010 Hb_016604_030--Hb_082006_010 Hb_000473_020 Hb_000473_020 Hb_016604_030--Hb_000473_020 Hb_005000_330 Hb_005000_330 Hb_016604_030--Hb_005000_330 Hb_182964_010 Hb_182964_010 Hb_016604_030--Hb_182964_010 Hb_003536_110 Hb_003536_110 Hb_016604_030--Hb_003536_110 Hb_000635_070--Hb_082006_010 Hb_009270_030 Hb_009270_030 Hb_000635_070--Hb_009270_030 Hb_004669_030 Hb_004669_030 Hb_000635_070--Hb_004669_030 Hb_129672_010 Hb_129672_010 Hb_000635_070--Hb_129672_010 Hb_002562_110 Hb_002562_110 Hb_000635_070--Hb_002562_110 Hb_082006_010--Hb_002562_110 Hb_082006_010--Hb_009270_030 Hb_002078_260 Hb_002078_260 Hb_082006_010--Hb_002078_260 Hb_082006_010--Hb_129672_010 Hb_041205_010 Hb_041205_010 Hb_082006_010--Hb_041205_010 Hb_000473_020--Hb_003536_110 Hb_005667_040 Hb_005667_040 Hb_000473_020--Hb_005667_040 Hb_000473_020--Hb_005000_330 Hb_004195_080 Hb_004195_080 Hb_000473_020--Hb_004195_080 Hb_026314_020 Hb_026314_020 Hb_000473_020--Hb_026314_020 Hb_000359_150 Hb_000359_150 Hb_000473_020--Hb_000359_150 Hb_004176_070 Hb_004176_070 Hb_005000_330--Hb_004176_070 Hb_005000_330--Hb_000359_150 Hb_002686_110 Hb_002686_110 Hb_005000_330--Hb_002686_110 Hb_000167_080 Hb_000167_080 Hb_005000_330--Hb_000167_080 Hb_004784_020 Hb_004784_020 Hb_005000_330--Hb_004784_020 Hb_006995_040 Hb_006995_040 Hb_182964_010--Hb_006995_040 Hb_001220_010 Hb_001220_010 Hb_182964_010--Hb_001220_010 Hb_007545_050 Hb_007545_050 Hb_182964_010--Hb_007545_050 Hb_000994_110 Hb_000994_110 Hb_182964_010--Hb_000994_110 Hb_001754_070 Hb_001754_070 Hb_182964_010--Hb_001754_070 Hb_001538_090 Hb_001538_090 Hb_003536_110--Hb_001538_090 Hb_031089_040 Hb_031089_040 Hb_003536_110--Hb_031089_040 Hb_078185_010 Hb_078185_010 Hb_003536_110--Hb_078185_010 Hb_001699_040 Hb_001699_040 Hb_003536_110--Hb_001699_040 Hb_005867_020 Hb_005867_020 Hb_003536_110--Hb_005867_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
134.889 81.8708 233.514 631.071 109.13 612.002
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
430.805 547.368 186.97 112.611 103.829

CAGE analysis