Hb_016657_020

Information

Type -
Description -
Location Contig16657: 27297-42991
Sequence    

Annotation

kegg
ID rcu:RCOM_1977610
description peroxisomal targeting signal type 1 (pts1) receptor, putative
nr
ID XP_002535309.1
description peroxisomal targeting signal type 1 (pts1) receptor, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9TAP0
description Peroxisomal targeting signal type 1 (Pts1) receptor, putative OS=Ricinus communis GN=RCOM_1977610 PE=4 SV=1
Gene Ontology
ID GO:0005622
description peroxisome biogenesis protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15369: 13359-42927
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016657_020 0.0 - - peroxisomal targeting signal type 1 (pts1) receptor, putative [Ricinus communis]
2 Hb_000317_440 0.0695716326 - - PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2 [Jatropha curcas]
3 Hb_000136_150 0.0774965974 - - hypothetical protein VITISV_038366 [Vitis vinifera]
4 Hb_117950_020 0.094431971 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Jatropha curcas]
5 Hb_000003_790 0.0990774622 - - PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]
6 Hb_000631_150 0.099182578 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
7 Hb_001486_120 0.0995227007 - - PREDICTED: importin-5-like [Jatropha curcas]
8 Hb_002883_010 0.1031434353 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
9 Hb_001437_100 0.1032450939 - - PREDICTED: DNA-binding protein REB1-like [Jatropha curcas]
10 Hb_004608_020 0.1038570494 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
11 Hb_000096_180 0.1072350891 - - PREDICTED: pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like isoform X1 [Jatropha curcas]
12 Hb_000002_440 0.1090789838 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
13 Hb_031754_010 0.1102745072 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
14 Hb_000078_100 0.1121546597 - - PREDICTED: topless-related protein 4-like isoform X2 [Jatropha curcas]
15 Hb_002820_040 0.1156951795 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000335_010 0.1156983315 - - WD-repeat protein, putative [Ricinus communis]
17 Hb_002067_150 0.1161264257 - - PREDICTED: ankyrin repeat protein SKIP35 [Jatropha curcas]
18 Hb_002043_170 0.1165059019 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
19 Hb_000134_360 0.1179718422 - - PREDICTED: protein gar2 [Jatropha curcas]
20 Hb_002725_070 0.1186921421 - - hypothetical protein PRUPE_ppa005949mg [Prunus persica]

Gene co-expression network

sample Hb_016657_020 Hb_016657_020 Hb_000317_440 Hb_000317_440 Hb_016657_020--Hb_000317_440 Hb_000136_150 Hb_000136_150 Hb_016657_020--Hb_000136_150 Hb_117950_020 Hb_117950_020 Hb_016657_020--Hb_117950_020 Hb_000003_790 Hb_000003_790 Hb_016657_020--Hb_000003_790 Hb_000631_150 Hb_000631_150 Hb_016657_020--Hb_000631_150 Hb_001486_120 Hb_001486_120 Hb_016657_020--Hb_001486_120 Hb_000317_440--Hb_000631_150 Hb_001437_100 Hb_001437_100 Hb_000317_440--Hb_001437_100 Hb_000317_440--Hb_000136_150 Hb_002883_010 Hb_002883_010 Hb_000317_440--Hb_002883_010 Hb_153547_010 Hb_153547_010 Hb_000317_440--Hb_153547_010 Hb_000136_150--Hb_001486_120 Hb_000136_150--Hb_001437_100 Hb_000136_150--Hb_002883_010 Hb_000805_310 Hb_000805_310 Hb_000136_150--Hb_000805_310 Hb_117950_020--Hb_153547_010 Hb_000078_100 Hb_000078_100 Hb_117950_020--Hb_000078_100 Hb_002725_070 Hb_002725_070 Hb_117950_020--Hb_002725_070 Hb_117950_020--Hb_000317_440 Hb_117950_020--Hb_000631_150 Hb_001431_070 Hb_001431_070 Hb_117950_020--Hb_001431_070 Hb_000134_360 Hb_000134_360 Hb_000003_790--Hb_000134_360 Hb_000003_790--Hb_000317_440 Hb_001975_020 Hb_001975_020 Hb_000003_790--Hb_001975_020 Hb_008528_010 Hb_008528_010 Hb_000003_790--Hb_008528_010 Hb_002235_320 Hb_002235_320 Hb_000003_790--Hb_002235_320 Hb_000003_790--Hb_002725_070 Hb_000631_150--Hb_000134_360 Hb_000849_100 Hb_000849_100 Hb_000631_150--Hb_000849_100 Hb_004608_020 Hb_004608_020 Hb_000631_150--Hb_004608_020 Hb_000318_140 Hb_000318_140 Hb_000631_150--Hb_000318_140 Hb_031754_010 Hb_031754_010 Hb_000631_150--Hb_031754_010 Hb_001486_120--Hb_000134_360 Hb_001486_120--Hb_000805_310 Hb_001486_120--Hb_000317_440 Hb_009421_030 Hb_009421_030 Hb_001486_120--Hb_009421_030 Hb_001486_120--Hb_008528_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.3914 25.1673 5.55655 5.57351 61.5749 70.4388
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.5802 7.19528 21.9754 26.4472 17.2672

CAGE analysis