Hb_016671_020

Information

Type -
Description -
Location Contig16671: 34667-39459
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID Q99315
description Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016671_020 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_014115_020 0.0003234727 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
3 Hb_099058_020 0.0012608723 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_002628_030 0.0017114902 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_003239_030 0.002579099 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
6 Hb_086455_010 0.0028088057 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
7 Hb_008898_010 0.0032825579 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_115505_010 0.0042891957 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
9 Hb_005472_010 0.0050633916 - - -
10 Hb_000204_170 0.0066332232 - - integrase [Gossypium herbaceum]
11 Hb_019299_040 0.0078775043 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor ABI3 [Jatropha curcas]
12 Hb_005986_020 0.0085940597 - - putative polyprotein [Oryza sativa Japonica Group]
13 Hb_171554_060 0.0162213541 - - PREDICTED: uncharacterized protein LOC102627687 [Citrus sinensis]
14 Hb_047623_010 0.0183876763 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
15 Hb_002417_040 0.0199721691 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
16 Hb_139518_020 0.0210331432 - - multidrug resistance pump, putative [Ricinus communis]
17 Hb_024128_010 0.0231040934 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
18 Hb_007111_020 0.0259160251 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
19 Hb_003694_070 0.0300724793 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
20 Hb_003463_040 0.034547003 - - -

Gene co-expression network

sample Hb_016671_020 Hb_016671_020 Hb_014115_020 Hb_014115_020 Hb_016671_020--Hb_014115_020 Hb_099058_020 Hb_099058_020 Hb_016671_020--Hb_099058_020 Hb_002628_030 Hb_002628_030 Hb_016671_020--Hb_002628_030 Hb_003239_030 Hb_003239_030 Hb_016671_020--Hb_003239_030 Hb_086455_010 Hb_086455_010 Hb_016671_020--Hb_086455_010 Hb_008898_010 Hb_008898_010 Hb_016671_020--Hb_008898_010 Hb_014115_020--Hb_099058_020 Hb_014115_020--Hb_002628_030 Hb_014115_020--Hb_003239_030 Hb_014115_020--Hb_008898_010 Hb_014115_020--Hb_086455_010 Hb_099058_020--Hb_003239_030 Hb_099058_020--Hb_008898_010 Hb_099058_020--Hb_002628_030 Hb_115505_010 Hb_115505_010 Hb_099058_020--Hb_115505_010 Hb_002628_030--Hb_086455_010 Hb_002628_030--Hb_003239_030 Hb_002628_030--Hb_008898_010 Hb_003239_030--Hb_008898_010 Hb_003239_030--Hb_115505_010 Hb_005472_010 Hb_005472_010 Hb_003239_030--Hb_005472_010 Hb_086455_010--Hb_099058_020 Hb_019299_040 Hb_019299_040 Hb_086455_010--Hb_019299_040 Hb_086455_010--Hb_003239_030 Hb_008898_010--Hb_115505_010 Hb_008898_010--Hb_005472_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.00471392
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0196592

CAGE analysis