Hb_016734_010

Information

Type -
Description -
Location Contig16734: 11104-11985
Sequence    

Annotation

kegg
ID rcu:RCOM_0536110
description DNA-3-methyladenine glycosylase, putative (EC:3.2.2.21)
nr
ID XP_012070575.1
description PREDICTED: probable DNA-3-methyladenine glycosylase 2 [Jatropha curcas]
swissprot
ID O94468
description Probable DNA-3-methyladenine glycosylase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mag2 PE=1 SV=1
trembl
ID A0A067KTA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05137 PE=4 SV=1
Gene Ontology
ID GO:0003824
description dna-3-methyladenine glycosylase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15458: 10744-12026
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016734_010 0.0 - - PREDICTED: probable DNA-3-methyladenine glycosylase 2 [Jatropha curcas]
2 Hb_004680_010 0.0602316294 - - PREDICTED: uncharacterized protein LOC105636246 isoform X1 [Jatropha curcas]
3 Hb_006683_020 0.0863169295 - - PREDICTED: nucleosome assembly protein 1;4 [Jatropha curcas]
4 Hb_000173_130 0.0863995962 - - PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Jatropha curcas]
5 Hb_002445_030 0.0922608778 - - hypothetical protein JCGZ_12656 [Jatropha curcas]
6 Hb_009372_020 0.0956204483 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
7 Hb_027760_060 0.0972843388 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
8 Hb_002739_120 0.0983377851 - - PREDICTED: zinc finger protein ZPR1-like [Jatropha curcas]
9 Hb_000735_080 0.0986003858 - - PREDICTED: probable xyloglucan glycosyltransferase 6 [Jatropha curcas]
10 Hb_013726_050 0.1032204581 - - PREDICTED: probable methyltransferase PMT13 [Jatropha curcas]
11 Hb_018845_010 0.1059577352 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
12 Hb_001097_040 0.1064194933 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
13 Hb_000599_360 0.1067498216 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
14 Hb_002304_050 0.1073108139 - - pyruvate kinase, putative [Ricinus communis]
15 Hb_000111_370 0.1076872521 - - PREDICTED: cation/H(+) antiporter 2-like [Jatropha curcas]
16 Hb_001646_020 0.1079405978 - - PREDICTED: chitin elicitor receptor kinase 1 isoform X2 [Jatropha curcas]
17 Hb_004375_110 0.1081764904 - - PREDICTED: probable ATP-dependent RNA helicase DHX37 [Jatropha curcas]
18 Hb_008289_040 0.1085419481 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
19 Hb_003964_110 0.1086344963 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
20 Hb_001085_080 0.1109705866 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]

Gene co-expression network

sample Hb_016734_010 Hb_016734_010 Hb_004680_010 Hb_004680_010 Hb_016734_010--Hb_004680_010 Hb_006683_020 Hb_006683_020 Hb_016734_010--Hb_006683_020 Hb_000173_130 Hb_000173_130 Hb_016734_010--Hb_000173_130 Hb_002445_030 Hb_002445_030 Hb_016734_010--Hb_002445_030 Hb_009372_020 Hb_009372_020 Hb_016734_010--Hb_009372_020 Hb_027760_060 Hb_027760_060 Hb_016734_010--Hb_027760_060 Hb_000735_080 Hb_000735_080 Hb_004680_010--Hb_000735_080 Hb_000111_370 Hb_000111_370 Hb_004680_010--Hb_000111_370 Hb_013726_050 Hb_013726_050 Hb_004680_010--Hb_013726_050 Hb_002304_050 Hb_002304_050 Hb_004680_010--Hb_002304_050 Hb_004680_010--Hb_002445_030 Hb_001097_040 Hb_001097_040 Hb_006683_020--Hb_001097_040 Hb_019280_010 Hb_019280_010 Hb_006683_020--Hb_019280_010 Hb_000683_050 Hb_000683_050 Hb_006683_020--Hb_000683_050 Hb_000701_030 Hb_000701_030 Hb_006683_020--Hb_000701_030 Hb_005914_140 Hb_005914_140 Hb_006683_020--Hb_005914_140 Hb_008289_040 Hb_008289_040 Hb_000173_130--Hb_008289_040 Hb_000173_130--Hb_002445_030 Hb_002552_040 Hb_002552_040 Hb_000173_130--Hb_002552_040 Hb_000703_330 Hb_000703_330 Hb_000173_130--Hb_000703_330 Hb_000815_300 Hb_000815_300 Hb_000173_130--Hb_000815_300 Hb_006438_020 Hb_006438_020 Hb_002445_030--Hb_006438_020 Hb_002445_030--Hb_013726_050 Hb_002445_030--Hb_008289_040 Hb_002445_030--Hb_002552_040 Hb_002687_180 Hb_002687_180 Hb_002445_030--Hb_002687_180 Hb_004375_110 Hb_004375_110 Hb_009372_020--Hb_004375_110 Hb_060094_010 Hb_060094_010 Hb_009372_020--Hb_060094_010 Hb_010068_070 Hb_010068_070 Hb_009372_020--Hb_010068_070 Hb_009372_020--Hb_000111_370 Hb_008165_020 Hb_008165_020 Hb_009372_020--Hb_008165_020 Hb_003964_110 Hb_003964_110 Hb_009372_020--Hb_003964_110 Hb_000029_170 Hb_000029_170 Hb_027760_060--Hb_000029_170 Hb_005074_020 Hb_005074_020 Hb_027760_060--Hb_005074_020 Hb_002317_010 Hb_002317_010 Hb_027760_060--Hb_002317_010 Hb_027760_060--Hb_008289_040 Hb_001646_020 Hb_001646_020 Hb_027760_060--Hb_001646_020 Hb_027760_060--Hb_002445_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.67142 6.74218 6.70971 10.1407 1.95035 2.13356
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.06932 2.66287 3.83456 7.01233 5.11012

CAGE analysis